View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5141_high_12 (Length: 250)
Name: NF5141_high_12
Description: NF5141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5141_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 5273143 - 5272914
Alignment:
| Q |
13 |
atactcaaataatggaaccttttgatcttcacaccaagcatgagatgcaaatgcagctcaaaaggaaacttgatgtgatagaagtggaggttcccgttga |
112 |
Q |
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| T |
5273143 |
atactcaaataatggaaccttttgatcttcacaccaagcatgagatgcaaatgaagctcaaaaggaaacttgatgtgatagaagtggaggttcccgttga |
5273044 |
T |
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| Q |
113 |
agaaaaaattaacaacaatccgaagaaaaaacctcgtgtttcgaaagatgtaagttttattttgtacctaatcttactataaaaagttgaaatagcaaca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
5273043 |
agaaaaaattaacaacaatccgaagaaaaaacctcgtgtttcgaatgatgtaagttttattttgtacctaatcttaatataaaaaattgaaatagcaaca |
5272944 |
T |
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| Q |
213 |
taataaatgcgaaatccatctctaattcca |
242 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5272943 |
taataaatgcgaaatccatctctaattcca |
5272914 |
T |
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