View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5141_high_13 (Length: 250)
Name: NF5141_high_13
Description: NF5141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5141_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 27228229 - 27227989
Alignment:
| Q |
1 |
ctagtccttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttattggaacagattaagaacttgtcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27228229 |
ctagtccttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttattggaacagattaagaacttgtcta |
27228130 |
T |
|
| Q |
101 |
aagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtcttaataagacccattggtccttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27228129 |
aagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaatattctgtcttaataagacccattggtccttt |
27228030 |
T |
|
| Q |
201 |
atttcaaaacccaaaaacaaaaactgcaagtaatatctgtg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27228029 |
atttcaaaacccaaaaacaaaaactgcaagtaatatctgtg |
27227989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 27224037 - 27223798
Alignment:
| Q |
2 |
tagtccttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttattggaacagattaagaacttgtctaa |
101 |
Q |
| |
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|||| ||||| |||||||| || || ||||| |||| ||||||||| | | || |||||||| || || || ||||||| ||||||||||||||||| |
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| T |
27224037 |
tagttcttaagtacaatgagatcccggattttgttcaaggttttagtacattttcaattcttgggacaatcataatggaacaaattaagaacttgtctaa |
27223938 |
T |
|
| Q |
102 |
agtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtcttaataagacccattggtccttta |
201 |
Q |
| |
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| T |
27223937 |
agtgttttgtgtattggttgatacgtatgaggaactagaacatgatttcatcgactatgtttctaaaaattcagtcaaaataagacctattggtcctttg |
27223838 |
T |
|
| Q |
202 |
tttcaaaacccaaaaacaaaaactgcaagtaatatctgtg |
241 |
Q |
| |
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||| |||||||| ||| |||| ||||||||||||||||| |
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| T |
27223837 |
tttaaaaacccacaaattaaaaatgcaagtaatatctgtg |
27223798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 11547291 - 11547058
Alignment:
| Q |
3 |
agtccttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttattggaacagattaagaacttgtctaaa |
102 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||| ||||||| ||||||||||| ||| ||||| | || |||||| ||||||| || |||||| |
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| T |
11547291 |
agtccttaaatacaatgaaatcccagattttcttcatccttttagtccatatccatttctagggacactcatcttagaacagtttaagaatttatctaaa |
11547192 |
T |
|
| Q |
103 |
gtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtcttaataagacccattggtcctttat |
202 |
Q |
| |
|
||||||||||| || || || |||||||| ||| | |||||||||||||| | |||||| ||||||| || || |||||||| |||||||| || | |
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| T |
11547191 |
gtgttttgtgttttagtagaaacctatgaagaactagaacatgatttcattgactatattacaaaaaaatccatccacataagacctattggtccattgt |
11547092 |
T |
|
| Q |
203 |
ttcaaaacccaaaaacaaaaactgcaagtaatat |
236 |
Q |
| |
|
|| |||| ||||| | ||| |||||||||||| |
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|
| T |
11547091 |
ttaaaaatccaaatattaaaggtgcaagtaatat |
11547058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 48618279 - 48618487
Alignment:
| Q |
7 |
cttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttattggaacagattaagaacttgtctaaagtgt |
106 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| ||||||| | | ||||||||| ||| ||||| | || |||||| ||||||| ||||||||||| | |
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| T |
48618279 |
cttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaagtat |
48618378 |
T |
|
| Q |
107 |
tttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtcttaataagacccattggtcctttatttca |
206 |
Q |
| |
|
||||||| || || || |||||||| ||| | || ||||||||||| | |||||||||||||| | | || |||||||||||||||| || ||||| |
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| T |
48618379 |
tttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaaaaaaacaattttcgtaagacccattggtccattgtttca |
48618478 |
T |
|
| Q |
207 |
aaacccaaa |
215 |
Q |
| |
|
|| ||||| |
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|
| T |
48618479 |
caatccaaa |
48618487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 48639874 - 48639761
Alignment:
| Q |
86 |
ttaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtcttaataag |
185 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||| ||| | || |||||||||||| |||||||||||||||| || || ||||| |
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|
| T |
48639874 |
ttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgatttcatagattatatttcaaaaaaatcaatcaccataag |
48639775 |
T |
|
| Q |
186 |
acccattggtcctt |
199 |
Q |
| |
|
||| |||||||||| |
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|
| T |
48639774 |
acctattggtcctt |
48639761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 215
Target Start/End: Complemental strand, 48667205 - 48666992
Alignment:
| Q |
2 |
tagtccttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttattggaacagattaagaacttgtctaa |
101 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| | ||| |||| ||| |||||| |||| ||| ||||| || |||||| ||| || ||||||| |
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| T |
48667205 |
tagttcttaaatacaatgaaatcccagattttatacatcctttttgtagatatccaattctagggacactcaccacggcacagataaaggacatgtctaa |
48667106 |
T |
|
| Q |
102 |
agtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtcttaataagacccattggtccttta |
201 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||||| || ||||||||||| |||||||||| |||| || || ||||||||| |||||||||| |
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| T |
48667105 |
agtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcggaaaaatcaatcgccataagacccgttggtcctttg |
48667006 |
T |
|
| Q |
202 |
tttcaaaacccaaa |
215 |
Q |
| |
|
||| |||| ||||| |
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|
| T |
48667005 |
tttaaaaatccaaa |
48666992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 48661517 - 48661442
Alignment:
| Q |
95 |
tgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaa |
170 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||| ||||| || ||||||||||| |||||||||||||||| |
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|
| T |
48661517 |
tgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcaaaaaa |
48661442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 48585301 - 48585217
Alignment:
| Q |
86 |
ttaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaa |
170 |
Q |
| |
|
||||| |||| |||||||||||||||||||| |||||||||||||| ||| | || ||||| |||||| |||||||||| ||||| |
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|
| T |
48585301 |
ttaaggacttatctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatatttcgaaaaa |
48585217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 48628838 - 48628731
Alignment:
| Q |
91 |
aacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtcttaataagaccca |
190 |
Q |
| |
|
|||||||| ||| | ||||||||||| | |||||||||||| ||| | || ||||||||||| ||||| |||| ||||| || ||| | || ||||||| |
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|
| T |
48628838 |
aacttgtccaaaatattttgtgtattagcggatacctatgaagaactagagcatgatttcatcgattatctttccaaaaaatcagtcctcattagaccca |
48628739 |
T |
|
| Q |
191 |
ttggtcct |
198 |
Q |
| |
|
|||||||| |
|
|
| T |
48628738 |
ttggtcct |
48628731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 197
Target Start/End: Complemental strand, 48653121 - 48652986
Alignment:
| Q |
62 |
ttgggtcactcttattggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatat |
161 |
Q |
| |
|
||||| ||||| | || ||||| |||||||| || |||||||| |||||||| || || || |||||||| ||| | || ||||||||||| | ||||| |
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|
| T |
48653121 |
ttgggacactcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatat |
48653022 |
T |
|
| Q |
162 |
ttcaaaaaattctgtcttaataagacccattggtcc |
197 |
Q |
| |
|
|||||| || || || | ||||||||||||||||| |
|
|
| T |
48653021 |
ttcaaacaaatcaatcctcataagacccattggtcc |
48652986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 197
Target Start/End: Complemental strand, 48656546 - 48656434
Alignment:
| Q |
85 |
attaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtcttaataa |
184 |
Q |
| |
|
|||||||| |||||||||| || |||||||| |||||||||||||| ||| | || | |||||| || |||||||||| |||| || || | |||| |
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|
| T |
48656546 |
attaagaatttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaagtcaatcatcataa |
48656447 |
T |
|
| Q |
185 |
gacccattggtcc |
197 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
48656446 |
gaccaattggtcc |
48656434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 19665647 - 19665798
Alignment:
| Q |
19 |
gaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttattggaacagattaagaacttgtctaaagtgttttgtgtattgg |
118 |
Q |
| |
|
|||||||| ||||| || ||| ||||||||| ||| ||||||| ||| ||||| | || |||||| ||||||| || |||||||||||||||||||||| |
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|
| T |
19665647 |
gaaataccggattttctacatccttttagtaaatattcatttctagggacactcattttagaacagtttaagaatttatctaaagtgttttgtgtattgg |
19665746 |
T |
|
| Q |
119 |
tggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaa |
170 |
Q |
| |
|
|||||| ||||| ||| | || ||||||| ||| | |||||||| ||||| |
|
|
| T |
19665747 |
tggatagttatgatgaactagagcatgattacatcgactatatttcgaaaaa |
19665798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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