View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5141_high_8 (Length: 263)
Name: NF5141_high_8
Description: NF5141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5141_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 40917269 - 40917513
Alignment:
| Q |
16 |
cataaggttgtttccaaatcttgtccatgtcaccattcttaatattgtagagaattacggtaaaatatgttagtgaccaaaaagcatctccaatgcaaga |
115 |
Q |
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| T |
40917269 |
cataaggttgtttacaaatcttgtccatgtcaccattcttaatattgtagagaattacggttaaatatgttagtgaccaaaaagcatctccaatgcaaga |
40917368 |
T |
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| Q |
116 |
aggagattaattaaaaacaatgttttatgttcttaagttatttttagtaggccccaagttaccacctatggctatgatttaagaactactcaaataaaga |
215 |
Q |
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| T |
40917369 |
aggagattaattaaaaacaatgttttatgttcttaagttatttttagtaggccccaagttaccacctatggctatgatttaagaactactcaaataaaga |
40917468 |
T |
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| Q |
216 |
aatggtgaaagggaggaattgaggaattagggtttcatctcactc |
260 |
Q |
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| T |
40917469 |
aatggtgaaagggaggaattgaggaattagggtttcttgtcactc |
40917513 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 14344795 - 14344751
Alignment:
| Q |
131 |
aacaatgttttatgttcttaagttatttttagtaggccccaagtt |
175 |
Q |
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| T |
14344795 |
aacaatgctttatgttcttgagttacttttagtgggccccaagtt |
14344751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 50422216 - 50422264
Alignment:
| Q |
127 |
taaaaacaatgttttatgttcttaagttatttttagtaggccccaagtt |
175 |
Q |
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| T |
50422216 |
taaaaaaaatgtttgatgttcttcagttatttttaattggccccaagtt |
50422264 |
T |
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