View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5141_low_1 (Length: 615)
Name: NF5141_low_1
Description: NF5141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5141_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 240 - 598
Target Start/End: Complemental strand, 47458860 - 47458502
Alignment:
| Q |
240 |
ttccaacgtaatagcacaagccatgcatggatgatgaattttaacaaatattagttagataatattacaatagaagttaattcataatacacattcaatc |
339 |
Q |
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| T |
47458860 |
ttccaacgtaatagcacacgccatgcatggatgatgaattttaacaaatattagttagataatattacaatagaagttaattcatattacacattcaatc |
47458761 |
T |
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| Q |
340 |
aatcataattgtaaattgtcagatcacatcactaaaaatgtttaacttcaattaaactgattaaaatgatgtaccttgtgaccaaaaatctttgggtttc |
439 |
Q |
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| T |
47458760 |
aatcataattgtaaattgtcagatcacatcactaaaaatgtttaacttcaattaaactgattaaaatgatgtaccttgtgaccaaaaatctttgggtttc |
47458661 |
T |
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| Q |
440 |
aacttgagcaaacgagacaactgagaattgagaagatcaacaactttctgagattcaagggcatccaatccaccatcttcagcaccaaaaccagcagcga |
539 |
Q |
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| T |
47458660 |
aacttgagcaaacaagacaactgagaattgagaagatcaacaactttctgagattcaagggcatccaatccaccatcttcagcaccaaaaccagcagcga |
47458561 |
T |
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| Q |
540 |
cagcttcatcttgcggcaaataatacacgaaattgccattcacaccccccggttgaacc |
598 |
Q |
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| T |
47458560 |
cagcttcatcttgcggcaaataatacacgaaattgccattcacaccccccggttgaacc |
47458502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 47459091 - 47458930
Alignment:
| Q |
9 |
acatcatcaaaacacgacggctcaaatcatgctctccaaaaataacaccagcaacaatccctctggccccacggtgagggaaatcataccacctgcttct |
108 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47459091 |
acatcatgaaaacacgacggctcaaatcatgctctccaaaaataacaccagcaacaatccctctggccccacggtgagggaaatcataccacctgcttct |
47458992 |
T |
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| Q |
109 |
aaattgcagaaagctgttgagaaactcatgcagggatgtatcactggccactacaaatacaa |
170 |
Q |
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| T |
47458991 |
aaattgcagaaagctgttgagaaactcatgcagggatgtatcactggccactacaaatacaa |
47458930 |
T |
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