View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5141_low_10 (Length: 260)
Name: NF5141_low_10
Description: NF5141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5141_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 5272628 - 5272857
Alignment:
| Q |
18 |
cctctactagctcttgtcttcccatttgagttgagagtagttcctccactattttcttgagaagcattatcatcctcagaaatgttactactagaactat |
117 |
Q |
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| T |
5272628 |
cctctactagctcttgtcttcccatttgagttgagagtagttcctccactattttcttgagaagcattatcatcctcagaaatgttactactagaactat |
5272727 |
T |
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| Q |
118 |
ttccatttgatcctctattaatctcttctgtcatctcctcttcatggctaacaataactttctggttcttctttgaccttgcatttttcatgcatccttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5272728 |
ttccatttgatcctctattaatctcttctgtcatctcctcttcatggctagcaataactttgtggttcttctttgaccttgcatttttcatgcatccttg |
5272827 |
T |
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| Q |
218 |
gccctagataattgaaattatgatgaaaat |
247 |
Q |
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|||||||||||||||||||| ||||||||| |
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| T |
5272828 |
gccctagataattgaaattacgatgaaaat |
5272857 |
T |
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