View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5141_low_18 (Length: 236)
Name: NF5141_low_18
Description: NF5141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5141_low_18 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 22541620 - 22541774
Alignment:
| Q |
5 |
ttatacttatacggttgtg--ttttgttgagagaattgatatctaaatgaatcaagtacttgtttctataacctttatttttgttaacattcattttcct |
102 |
Q |
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| T |
22541620 |
ttatacttatacggttgtgatttttgttgagagaattggtatctaaatgaatcaagtacttgtttctataacctttatttttgttaacattcattttcct |
22541719 |
T |
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| Q |
103 |
aggtagaattattgtgaattgtgatgtttataacttaggcagaattgtgtttgta |
157 |
Q |
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| T |
22541720 |
aggcagaattattgtgaattgtgatgtttataacttaggcagaattgtgtttgta |
22541774 |
T |
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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 22541802 - 22541872
Alignment:
| Q |
166 |
ttgtggatggtgaatccgtgaatgtattgtaactaataatgtgatgtttataagttaggcagattagcgca |
236 |
Q |
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| T |
22541802 |
ttgtggatggtgaatccgtgaatgtattgtaactaataatgtgatgttgataatttaggcagattagcgca |
22541872 |
T |
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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 43585595 - 43585648
Alignment:
| Q |
183 |
gtgaatgtattgtaactaataatgtgatgtttataagttaggcagattagcgca |
236 |
Q |
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| T |
43585595 |
gtgaatgtattgtaactaataatgtgatgtttataacttaggcaaattagcgca |
43585648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 53707777 - 53707852
Alignment:
| Q |
24 |
ttttgttgagagaattgatatctaaatgaatcaagtacttgtttctataacctttatttttgttaacattcattttc |
100 |
Q |
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| T |
53707777 |
ttttgttgatagaattggtatctaaattca-caagtacttgattctctgacctttatttttgttaacattcattttc |
53707852 |
T |
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 38578085 - 38578010
Alignment:
| Q |
24 |
ttttgttgagagaattgatatctaaatgaatcaagtacttgtttctataacctttatttttgttaacattcattttc |
100 |
Q |
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| T |
38578085 |
ttttgttgatagaattggtatctaaattca-caagtacttgattctctaacctttatttttcttaacattcattttc |
38578010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 39531664 - 39531696
Alignment:
| Q |
113 |
attgtgaattgtgatgtttataacttaggcaga |
145 |
Q |
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| T |
39531664 |
attgtgatttgtgatgtttataacttaggcaga |
39531696 |
T |
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