View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5141_low_19 (Length: 202)
Name: NF5141_low_19
Description: NF5141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5141_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 36859927 - 36860099
Alignment:
| Q |
13 |
attattctaattagaacatcatctttcatccataattcacgttgtccacatcatattaataataatgtctgtcctaggtgctcttttctttccctacctt |
112 |
Q |
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| T |
36859927 |
attattctaattagaacatcatctttcatccataattcactttgtccacatcatattaataataatttctgtcctaggtgctcttttctttccctacctt |
36860026 |
T |
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| Q |
113 |
cccaaatcacaggcttaacttgcacacatgttcataacatggttgttttgcgcatgttgtgttagaatcttat |
185 |
Q |
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| T |
36860027 |
cccaaatcacaggcttaacttgcacacatgctcacaacatggttgttttgctcatgttgtgttagaatcttat |
36860099 |
T |
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Target: chr5 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 69 - 187
Target Start/End: Complemental strand, 35029842 - 35029727
Alignment:
| Q |
69 |
taataataatgtctgtcctaggtgctcttttctttccctaccttcccaaatcacaggcttaacttgcacacatgttcataacatggttgttttgcgcatg |
168 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||| |||| |
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| T |
35029842 |
taataataatgtctgtcataggt--tcttttctttccctaccttcccaaatcaccggcttaact-gcacacatgttcacaacatggctgttttgatcatg |
35029746 |
T |
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| Q |
169 |
ttgtgttagaatcttattg |
187 |
Q |
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| T |
35029745 |
ttgtgttagaatcttattg |
35029727 |
T |
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