View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5141_low_2 (Length: 368)
Name: NF5141_low_2
Description: NF5141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5141_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 45084787 - 45084988
Alignment:
| Q |
18 |
acaattgtaattcaattcctcagattcaacacatacaacctaaaacaaagcatcaatttagaagtaaccaaaacagaataattgaacttgtcatttgaca |
117 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
45084787 |
acaattgtaattgaatgcctcagattcaacacatacaacctaaaacaaagcttcaatttagaagaaaccaaaacataataattgaacttgtcatttgaca |
45084886 |
T |
|
| Q |
118 |
aagaaaagaaaagggaaaataataatgnnnnnnnatattgatagaacgggaaggttcgattaaataacaaaagaagaagaaacaaatacaaattttcctt |
217 |
Q |
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||||||| |||||||||||||||| || ||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45084887 |
aagaaaa-aaaagggaaaataatagtgtttttttata-tgatagaacgggaaggttcaattaaataacagaagaagaagaaacaaatacaaattttcctt |
45084984 |
T |
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| Q |
218 |
ccct |
221 |
Q |
| |
|
|||| |
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|
| T |
45084985 |
ccct |
45084988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 45085071 - 45085112
Alignment:
| Q |
302 |
caagaatgaagttttaggttcgtttgcatgcaagtatttctt |
343 |
Q |
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| T |
45085071 |
caagaatgaagttttaggttcgtttgcatgcaagtatttctt |
45085112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 45084463 - 45084423
Alignment:
| Q |
302 |
caagaatgaagttttaggttcgtttgcatgcaagtatttct |
342 |
Q |
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| T |
45084463 |
caagaataaagttttaggttcgtttgcatgcaaatatttct |
45084423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 4768016 - 4767807
Alignment:
| Q |
18 |
acaattgtaattcaattcctcagattcaacacatacaacctaaaacaaagcatcaatttagaagtaaccaaaacagaataattgaacttgtcatttgaca |
117 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4768016 |
acaattgtaattgaatgcctcagattcaacacatacaacctaaaacaaagcttcaatttagaagaaaccaaaacagaataattgaacttgtcatttgaca |
4767917 |
T |
|
| Q |
118 |
aagaaaagaaaagggaaaataataatgnnnnnnnatattgatagaacgggaaggttcgattaaataac------aaaagaagaagaaacaaatacaaatt |
211 |
Q |
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||||||| |||||||||||||||| | ||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||| |
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| T |
4767916 |
aagaaaaaaaaagggaaaataatagcgtttttttatattgatagaacgggaaggttcaattaaataacagaagaagaagaagaagaaacaaatacaaatt |
4767817 |
T |
|
| Q |
212 |
ttccttccct |
221 |
Q |
| |
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|||||||||| |
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|
| T |
4767816 |
ttccttccct |
4767807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 4767735 - 4767695
Alignment:
| Q |
302 |
caagaatgaagttttaggttcgtttgcatgcaagtatttct |
342 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4767735 |
caagaatgaagttttaggttcgtttgcatgcaagtatttct |
4767695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 4768351 - 4768388
Alignment:
| Q |
302 |
caagaatgaagttttaggttcgtttgcatgcaagtatt |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
4768351 |
caagaatgaagttttaggttcgtttgcatgcaagtatt |
4768388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 28637746 - 28637786
Alignment:
| Q |
302 |
caagaatgaagttttaggttcgtttgcatgcaagtatttct |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
28637746 |
caagaatgaagttttaggttcgtttgcatgcaagtatttct |
28637786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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