View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5141_low_3 (Length: 355)
Name: NF5141_low_3
Description: NF5141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5141_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 183 - 334
Target Start/End: Complemental strand, 7279074 - 7278923
Alignment:
| Q |
183 |
gataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgttagagtcttccattgttctgctcttagggacttgagaaagtcgattatc |
282 |
Q |
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| T |
7279074 |
gataaggatcgctgaaacaattatgaatttgcttcttaggttggattctgttagagtatttcattgttctgctcttagggacttgagaaagtcgattatc |
7278975 |
T |
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| Q |
283 |
aaaagggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtc |
334 |
Q |
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| T |
7278974 |
aaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtc |
7278923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 183 - 334
Target Start/End: Original strand, 7374765 - 7374916
Alignment:
| Q |
183 |
gataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgttagagtcttccattgttctgctcttagggacttgagaaagtcgattatc |
282 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
7374765 |
gataaggatcgctgaaacaattatgaatttgcttcttaggttggattctgttagagtatttcattgttctgctcttagggacttgagaaagtcgattatc |
7374864 |
T |
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| Q |
283 |
aaaagggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtc |
334 |
Q |
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| T |
7374865 |
aaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtc |
7374916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 7279246 - 7279143
Alignment:
| Q |
11 |
cagagagaaacagagccgattcagcaacgaagattgagaaggttgcaagagggtttcttgtgaggacgagtttgaacaagattttgaagatgaaagtgga |
110 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
7279246 |
cagagagaaacaaagccaattcagcaacgaagattgagaaggttgcaagagggtttcttgtgaggaagagtttgaacaagatgttgaagatgaaagtgga |
7279147 |
T |
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| Q |
111 |
gttg |
114 |
Q |
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|||| |
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| T |
7279146 |
gttg |
7279143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 7374593 - 7374696
Alignment:
| Q |
11 |
cagagagaaacagagccgattcagcaacgaagattgagaaggttgcaagagggtttcttgtgaggacgagtttgaacaagattttgaagatgaaagtgga |
110 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || || |
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| T |
7374593 |
cagagagaaacaaagccaattcagcaacgaagattgagaaggttgcaagagggtttcttgtgaggaagagtttgaacaagatgttgaagatgaaggtaga |
7374692 |
T |
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| Q |
111 |
gttg |
114 |
Q |
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|||| |
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| T |
7374693 |
gttg |
7374696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 5848003 - 5848103
Alignment:
| Q |
11 |
cagagagaaacagagccgattcagcaacgaagattgagaaggttgcaagagggtttcttgtgaggacgagtttgaacaagattttgaagatgaaagtgga |
110 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||||| ||||| |||||||| || ||||| |
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| T |
5848003 |
cagagagaaacagagccgactcagcaatgaagattgagaagtttgcaagaggttttcttgtgaggaagagtttgaagaagatgttgaagatcaaggtgga |
5848102 |
T |
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| Q |
111 |
g |
111 |
Q |
| |
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| |
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| T |
5848103 |
g |
5848103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 5848163 - 5848215
Alignment:
| Q |
183 |
gataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgtta |
235 |
Q |
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|||||||||| || |||| |||||||||||||||||||||||||||||||||| |
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| T |
5848163 |
gataaggatcactaaaaccatcatgaatttgcttcttaggttggattctgtta |
5848215 |
T |
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