View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5141_low_7 (Length: 290)

Name: NF5141_low_7
Description: NF5141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5141_low_7
NF5141_low_7
[»] chr4 (10 HSPs)
chr4 (7-290)||(785999-786282)
chr4 (37-155)||(52374914-52375031)
chr4 (49-157)||(21433896-21434003)
chr4 (37-81)||(41840590-41840634)
chr4 (37-81)||(21433870-21433914)
chr4 (135-180)||(45654105-45654150)
chr4 (37-81)||(2247577-2247621)
chr4 (49-117)||(2324767-2324835)
chr4 (37-81)||(17508762-17508806)
chr4 (45-81)||(31758785-31758821)
[»] chr3 (10 HSPs)
chr3 (13-81)||(3901591-3901659)
chr3 (37-157)||(31205366-31205485)
chr3 (40-155)||(4276999-4277118)
chr3 (49-151)||(40763397-40763498)
chr3 (37-157)||(36480730-36480849)
chr3 (37-81)||(49750599-49750643)
chr3 (37-80)||(14345148-14345191)
chr3 (86-180)||(14345151-14345244)
chr3 (40-81)||(3901499-3901540)
chr3 (39-79)||(35357316-35357356)
[»] chr1 (6 HSPs)
chr1 (46-126)||(45925161-45925241)
chr1 (37-81)||(2542699-2542743)
chr1 (37-81)||(38663648-38663692)
chr1 (49-155)||(731355-731460)
chr1 (39-81)||(49822626-49822668)
chr1 (40-81)||(34437598-34437639)
[»] chr6 (4 HSPs)
chr6 (37-81)||(5706717-5706761)
chr6 (37-81)||(13597239-13597283)
chr6 (135-190)||(9358209-9358264)
chr6 (37-110)||(19711635-19711708)
[»] chr2 (6 HSPs)
chr2 (42-161)||(33069186-33069304)
chr2 (40-81)||(23001430-23001471)
chr2 (40-157)||(44247538-44247654)
chr2 (40-81)||(25666798-25666839)
chr2 (40-81)||(42251261-42251302)
chr2 (37-81)||(1469736-1469780)
[»] chr8 (4 HSPs)
chr8 (40-117)||(4994155-4994232)
chr8 (138-189)||(4994146-4994197)
chr8 (37-81)||(36914887-36914931)
chr8 (37-81)||(40566554-40566598)
[»] chr5 (3 HSPs)
chr5 (14-81)||(17474871-17474939)
chr5 (39-157)||(36059230-36059347)
chr5 (40-117)||(4158141-4158218)
[»] scaffold0137 (1 HSPs)
scaffold0137 (13-108)||(8251-8346)
[»] chr7 (6 HSPs)
chr7 (135-165)||(5443623-5443653)
chr7 (39-81)||(5443627-5443669)
chr7 (135-165)||(5452668-5452698)
chr7 (39-81)||(5452672-5452714)
chr7 (135-165)||(24516571-24516601)
chr7 (39-115)||(47497764-47497840)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 785999 - 786282
Alignment:
Q  7 tacaaataagaggaatgccaacaacgtatatttaacacatatttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtg 106  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  785999 tacaaataagaggaatgccaacgacgtatatttaacacatatttttcaacatactctccttgattgattaaaattgatttgaatctcactaaattatgtg 786098  T
Q  107 ggtctcatatatatctgatgaatctcattgtgaattttaaccaatcaaagaaagtatgtgaaaaaatatatgttgttaacatttatctacaaattatgct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  786099 ggtctcatatatatctgatgaatctcattgtgaattttaaccaattaaagagagtatctgaaaaaatatatgttgttaacatttatctacaaattatgct 786198  T
Q  207 tacacgttttgttagttgaagccttaaaggtgataaacactgtttgtgtaaattagattcagataagacaagagctagtgggtt 290  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||    
T  786199 tacacgttttgttagttgaagccttaaaggtgataaacaatgtttgagtaaattagattaagataagacaagagctagtgggtt 786282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 37 - 155
Target Start/End: Original strand, 52374914 - 52375031
Alignment:
Q  37 tttaacacatatttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtgggtctcatatatatctgatgaatctcattg 136  Q
    ||||||||| | ||||||||| |||||||||||| |||||||||| |  || ||||||| |||||||||||||| | |||| || ||||| |||  | ||    
T  52374914 tttaacacacacttttcaacacactctctttgatagattaaaattcacatggatctcaccaaattatgtgggtcccgtataaatttgatggatc-aaatg 52375012  T
Q  137 tgaattttaaccaatcaaa 155  Q
    |||||||||||||||||||    
T  52375013 tgaattttaaccaatcaaa 52375031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 21434003 - 21433896
Alignment:
Q  49 ttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtgggtctcatatatatctgatgaatctcattgtgaattttaacc 148  Q
    ||||||||| |||||| ||||||| |||||||| |  || ||| ||| |||| |||||||||||||||| || || ||  ||||| ||||||||||||||    
T  21434003 ttttcaacacactctcattgattggttaaaattcacatggatcccaccaaatcatgtgggtctcatataaatttggtgggtctca-tgtgaattttaacc 21433905  T
Q  149 aatcaaaga 157  Q
    |||||||||    
T  21433904 aatcaaaga 21433896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 41840590 - 41840634
Alignment:
Q  37 tttaacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  41840590 tttaacacatatttttcaacacactctctttgattgattaaaatt 41840634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 21433870 - 21433914
Alignment:
Q  37 tttaacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||    
T  21433870 tttaacacacatttttcaacacactctctttgattggttaaaatt 21433914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 45654105 - 45654150
Alignment:
Q  135 tgtgaattttaaccaatcaaagaaagtatgtgaaaaaatatatgtt 180  Q
    ||||||||||||||||||||| ||||| ||| ||||||||| ||||    
T  45654105 tgtgaattttaaccaatcaaaaaaagtgtgttaaaaaatatgtgtt 45654150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 2247577 - 2247621
Alignment:
Q  37 tttaacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    ||||||||| | ||||||||| ||||||||| |||||||||||||    
T  2247577 tttaacacacacttttcaacacactctctttaattgattaaaatt 2247621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 2324767 - 2324835
Alignment:
Q  49 ttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtgggtctcatata 117  Q
    ||||||| |||||||||||||||| |||||||| |  ||| | |||| |||| ||||||||| ||||||    
T  2324767 ttttcaatatactctctttgattggttaaaattcacatgagtttcaccaaatcatgtgggtcccatata 2324835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 17508762 - 17508806
Alignment:
Q  37 tttaacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    ||||||||| ||||||||||| ||||| ||||||| |||||||||    
T  17508762 tttaacacacatttttcaacacactctttttgatttattaaaatt 17508806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 31758821 - 31758785
Alignment:
Q  45 atatttttcaacatactctctttgattgattaaaatt 81  Q
    ||||||||||||| | |||||||||||||||||||||    
T  31758821 atatttttcaacacattctctttgattgattaaaatt 31758785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 3901659 - 3901591
Alignment:
Q  13 taagaggaatgccaacaacgtatatttaacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    |||||||||||| |||||| || |||||||||| | ||||||||| |||||||||||||| ||||||||    
T  3901659 taagaggaatgctaacaacatacatttaacacacacttttcaacacactctctttgattggttaaaatt 3901591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 157
Target Start/End: Original strand, 31205366 - 31205485
Alignment:
Q  37 tttaacacatatttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtgggtctcatatatatctgatgaatctcattg 136  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||| |  ||  ||| || |||| ||||||||| |||||| |  || ||  ||||| ||    
T  31205366 tttaacacatattttccaacacactctctttgattggttaaaatttacatgggtcttaccaaatcatgtgggtcccatataaaattggtgggtctca-tg 31205464  T
Q  137 tgaattttaaccaatcaaaga 157  Q
    |||||||| ||||||||||||    
T  31205465 tgaattttgaccaatcaaaga 31205485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 4277118 - 4276999
Alignment:
Q  40 aacacatatttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtgggtctcatatatatctgatgaatctcat----t 135  Q
    |||||| ||||||||||| ||| ||||||||||||||| ||| || ||  ||||| ||||| ||||||||| |||||| || || ||  ||||||    |    
T  4277118 aacacacatttttcaacacactttctttgattgattaatatttatatgggtctcattaaatcatgtgggtcccatataaatttggtgggtctcatgtcat 4277019  T
Q  136 gtgaattttaaccaatcaaa 155  Q
    ||||||||||| ||||||||    
T  4277018 gtgaattttaatcaatcaaa 4276999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 40763498 - 40763397
Alignment:
Q  49 ttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtgggtctcatatatatctgatgaatctcattgtgaattttaacc 148  Q
    ||||||||||||||||||| ||| ||||||||| |  ||| |  ||| |||| |||||| || |||||| || ||||| |||||| ||||||||||||||    
T  40763498 ttttcaacatactctctttaatttattaaaattcacctgagttccaccaaatcatgtggatcccatataaatttgatggatctca-tgtgaattttaacc 40763400  T
Q  149 aat 151  Q
    |||    
T  40763399 aat 40763397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 157
Target Start/End: Complemental strand, 36480849 - 36480730
Alignment:
Q  37 tttaacacatatttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtgggtctcatatatatctgatgaatctcattg 136  Q
    ||||||||| | |||||||||| |||||||||||||  ||||||| |  ||  || ||| |||| ||||||||| |||||| || || ||  || || ||    
T  36480849 tttaacacacacttttcaacattctctctttgattggctaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttgttgggtccca-tg 36480751  T
Q  137 tgaattttaaccaatcaaaga 157  Q
    |||||||||||||||||||||    
T  36480750 tgaattttaaccaatcaaaga 36480730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 49750599 - 49750643
Alignment:
Q  37 tttaacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    ||||| ||||||||||||||| | |||||||||||||||||||||    
T  49750599 tttaaaacatatttttcaacacattctctttgattgattaaaatt 49750643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 14345148 - 14345191
Alignment:
Q  37 tttaacacatatttttcaacatactctctttgattgattaaaat 80  Q
    ||||||||||||||||||||| ||| |||||||||| |||||||    
T  14345148 tttaacacatatttttcaacacactttctttgattggttaaaat 14345191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 14345244 - 14345151
Alignment:
Q  86 tgaatctcactaaattatgtgggtctcatatatatctgatgaatctcattgtgaattttaaccaatcaaagaaagtatgtgaaaaaatatatgtt 180  Q
    |||||| ||| |||| ||||||||| |||||| || || ||  |||||| ||| |||||||||||||||||||||| |||  |||||||| ||||    
T  14345244 tgaatcccaccaaatcatgtgggtcccatataaatttggtgggtctcat-gtggattttaaccaatcaaagaaagtgtgttgaaaaatatgtgtt 14345151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 3901499 - 3901540
Alignment:
Q  40 aacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    |||||||||||||||||| | |||||||||||| ||||||||    
T  3901499 aacacatatttttcaacacattctctttgattggttaaaatt 3901540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 35357316 - 35357356
Alignment:
Q  39 taacacatatttttcaacatactctctttgattgattaaaa 79  Q
    ||||| ||||||||||||| |||||||||||||| ||||||    
T  35357316 taacaaatatttttcaacacactctctttgattggttaaaa 35357356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 45925241 - 45925161
Alignment:
Q  46 tatttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtgggtctcatatatatctgatg 126  Q
    |||||||||||| | | ||||||||||||||||||| || ||| |||||| |||||||||||||| |||||| || |||||    
T  45925241 tatttttcaacacattttctttgattgattaaaattcatatgagtctcaccaaattatgtgggtcccatataaatttgatg 45925161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 2542699 - 2542743
Alignment:
Q  37 tttaacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||    
T  2542699 tttaacacacatttttcaacacactctctttgattggttaaaatt 2542743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 38663648 - 38663692
Alignment:
Q  37 tttaacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    ||||||||||||||||||||| |||||||||||||| ||| ||||    
T  38663648 tttaacacatatttttcaacacactctctttgattggttacaatt 38663692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 731460 - 731355
Alignment:
Q  49 ttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtgggtctcatatatatctgatgaatctcattgtgaattttaacc 148  Q
    ||||||||| | ||| ||| |||| |||||||| |  ||| || ||| |||| ||||||||| |||||| || || |||||||||| ||||||||||| |    
T  731460 ttttcaacaaagtcttttttattggttaaaatttacatgagtcgcaccaaatcatgtgggtcccatataaatttggtgaatctcat-gtgaattttaatc 731362  T
Q  149 aatcaaa 155  Q
    |||||||    
T  731361 aatcaaa 731355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 49822668 - 49822626
Alignment:
Q  39 taacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  49822668 taacacacatttttcaacacactctctttgattggttaaaatt 49822626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 34437598 - 34437639
Alignment:
Q  40 aacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    |||||| ||||||||||| |||||||||||||| ||||||||    
T  34437598 aacacacatttttcaacaaactctctttgattggttaaaatt 34437639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 5706761 - 5706717
Alignment:
Q  37 tttaacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||    
T  5706761 tttaacacatacttttcaacacactctctttgattgattaaaatt 5706717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 13597283 - 13597239
Alignment:
Q  37 tttaacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||    
T  13597283 tttaacacatatttttcaacacactctctttgatcaattaaaatt 13597239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 9358264 - 9358209
Alignment:
Q  135 tgtgaattttaaccaatcaaagaaagtatgtgaaaaaatatatgttgttaacattt 190  Q
    ||||||||||||||||||||| | | ||||| ||||||||| |||||||| |||||    
T  9358264 tgtgaattttaaccaatcaaatataatatgttaaaaaatatgtgttgttagcattt 9358209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 19711635 - 19711708
Alignment:
Q  37 tttaacacatatttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtgggtc 110  Q
    ||||||||||||||||||| ||||||  ||| ||||||||||||| || ||  || ||||||||  ||||||||    
T  19711635 tttaacacatatttttcaatatactcgttttaattgattaaaatttatatgggtcccactaaatcgtgtgggtc 19711708  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 33069304 - 33069186
Alignment:
Q  42 cacatatttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtgggtctcatatatatctgatgaatctcattgtgaat 141  Q
    |||||| ||||||||| ||||| |||||||| |||||| | | |||  || |||||||||||||||||| |||||| |  || ||  ||| | |||||||    
T  33069304 cacataattttcaacacactctttttgattggttaaaaatcacttgggtcccactaaattatgtgggtcccatataaacttggtgggtct-aatgtgaat 33069206  T
Q  142 tttaaccaatcaaagaaagt 161  Q
    ||||||| ||||||||||||    
T  33069205 tttaaccgatcaaagaaagt 33069186  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 23001430 - 23001471
Alignment:
Q  40 aacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    |||||| |||||||||||||||||||||||||| ||||||||    
T  23001430 aacacacatttttcaacatactctctttgattggttaaaatt 23001471  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 44247538 - 44247654
Alignment:
Q  40 aacacatatttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtgggtctcatatatatctgatgaatctcattgtga 139  Q
    |||||| ||||||||||| ||| |||||||||| || ||||| |  ||  |  ||| |||||||||||||| |||| | || ||||| ||| ||| ||||    
T  44247538 aacacacatttttcaacaaactatctttgattggttgaaattcacatgggttccaccaaattatgtgggtcccatacaaatttgatggatcccat-gtga 44247636  T
Q  140 attttaaccaatcaaaga 157  Q
    ||||||||||||||||||    
T  44247637 attttaaccaatcaaaga 44247654  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 25666798 - 25666839
Alignment:
Q  40 aacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    |||||| ||||||||||| ||||| |||||||||||||||||    
T  25666798 aacacacatttttcaacacactctatttgattgattaaaatt 25666839  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 42251302 - 42251261
Alignment:
Q  40 aacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    |||||| | ||||||||| |||||||||||||||||||||||    
T  42251302 aacacacacttttcaacacactctctttgattgattaaaatt 42251261  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 1469736 - 1469780
Alignment:
Q  37 tttaacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    ||||||||||||||||||||| ||||| ||| |||| ||||||||    
T  1469736 tttaacacatatttttcaacacactctatttaattggttaaaatt 1469780  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 4994155 - 4994232
Alignment:
Q  40 aacacatatttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtgggtctcatata 117  Q
    ||||||||||||| |||||||||| |||||||| ||||||||  | ||| || ||| |||| ||||||||| ||||||    
T  4994155 aacacatattttttaacatactctttttgattggttaaaattcttatgagtcccaccaaatcatgtgggtcccatata 4994232  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 4994197 - 4994146
Alignment:
Q  138 gaattttaaccaatcaaagaaagtatgtgaaaaaatatatgttgttaacatt 189  Q
    |||||||||||||||||| | ||||||| ||||||||| |||||||| ||||    
T  4994197 gaattttaaccaatcaaaaagagtatgttaaaaaatatgtgttgttatcatt 4994146  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 36914887 - 36914931
Alignment:
Q  37 tttaacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    ||||||||| ||||||||||||| | ||||| |||||||||||||    
T  36914887 tttaacacacatttttcaacatattatctttaattgattaaaatt 36914931  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 40566598 - 40566554
Alignment:
Q  37 tttaacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    |||||||||||||||||||||  |||| |||||||| ||||||||    
T  40566598 tttaacacatatttttcaacacgctctttttgattggttaaaatt 40566554  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 17474939 - 17474871
Alignment:
Q  14 aagaggaatgccaacaacgtatattt-aacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    ||||||||||| |||||| || |||| |||||| | ||||||||| || ||||||||||||||||||||    
T  17474939 aagaggaatgctaacaacatacattttaacacacacttttcaacacacactctttgattgattaaaatt 17474871  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 36059347 - 36059230
Alignment:
Q  39 taacacatatttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtgggtctcatatatatctgatgaatctcattgtg 138  Q
    ||||||||| ||| ||||| ||| | |||||||| |||||||| |  || ||| ||  |||| |||||||||||||||| || |||||  ||||| ||||    
T  36059347 taacacatactttccaacacactttatttgattggttaaaatttacatggatcccatcaaatcatgtgggtctcatataaatttgatgggtctca-tgtg 36059249  T
Q  139 aattttaaccaatcaaaga 157  Q
    ||| |||| ||||||||||    
T  36059248 aatcttaatcaatcaaaga 36059230  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 4158218 - 4158141
Alignment:
Q  40 aacacatatttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtgggtctcatata 117  Q
    |||||| |||||| || |||||||||||||||| |||||||| |   ||||| ||  |||||||||||| ||||||||    
T  4158218 aacacacattttttaatatactctctttgattggttaaaattcacacgaatcccatcaaattatgtgggactcatata 4158141  T

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Target: scaffold0137 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 8346 - 8251
Alignment:
Q  13 taagaggaatgccaacaacgtatatttaacacatatttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtggg 108  Q
    |||||||||||| |||||| || |||||||||| | ||||||||  | ||| ||||||||  ||||||| |  |||||| ||| ||||||||||||    
T  8346 taagaggaatgctaacaacatacatttaacacacacttttcaacgcattctttttgattggctaaaattcacatgaatcccaccaaattatgtggg 8251  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 5443623 - 5443653
Alignment:
Q  135 tgtgaattttaaccaatcaaagaaagtatgt 165  Q
    |||||||||||||||||||||||||||||||    
T  5443623 tgtgaattttaaccaatcaaagaaagtatgt 5443653  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 5443669 - 5443627
Alignment:
Q  39 taacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||    
T  5443669 taacacacatttttcaacatactttctttgattggttaaaatt 5443627  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 5452668 - 5452698
Alignment:
Q  135 tgtgaattttaaccaatcaaagaaagtatgt 165  Q
    |||||||||||||||||||||||||||||||    
T  5452668 tgtgaattttaaccaatcaaagaaagtatgt 5452698  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 5452714 - 5452672
Alignment:
Q  39 taacacatatttttcaacatactctctttgattgattaaaatt 81  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||    
T  5452714 taacacacatttttcaacatactttctttgattggttaaaatt 5452672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 165
Target Start/End: Complemental strand, 24516601 - 24516571
Alignment:
Q  135 tgtgaattttaaccaatcaaagaaagtatgt 165  Q
    |||||||||||||||||||||||||||||||    
T  24516601 tgtgaattttaaccaatcaaagaaagtatgt 24516571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 47497840 - 47497764
Alignment:
Q  39 taacacatatttttcaacatactctctttgattgattaaaattgatttgaatctcactaaattatgtgggtctcata 115  Q
    ||||||| ||||||||| ||| | |||||||||| |||||||| |  ||| || ||| |||||||||||||| ||||    
T  47497840 taacacacatttttcaatatattttctttgattggttaaaattcacatgagtcccaccaaattatgtgggtcccata 47497764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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