View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5141_low_8 (Length: 268)
Name: NF5141_low_8
Description: NF5141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5141_low_8 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 160678 - 160412
Alignment:
| Q |
1 |
agaaggattgaaattaccggtgcatgttcttgttcggaacttgttggaagcgtattcgatgcaaacgtagggatcttgtcttgaaatccattcagtgtct |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
160678 |
agaaggattgaaattaccagtgcatgttcttgttcggaacttggtggaagcgtattcgatgcaaacgtagggatcttgtcttgaaatccattcagtgtct |
160579 |
T |
|
| Q |
101 |
ttcaatttcgagcaagaaacgactacaattaacaaggaaggaacaattcatcatctcttaataataaaatcaaaacaaagtcaaagagtaaaatcaactg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
160578 |
ttcaatttcgagcaagaaacgactacaat-aacaaggaaggaacaattcatcatctcttaataataaaatcaaaacaaagtcaaagagtaaaatcaactg |
160480 |
T |
|
| Q |
201 |
aattgctcttaccagtaacctcgagaggtttgccttgaatcccagacatcatcatcgtgagttgagtt |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
160479 |
aattgctcttaccagtaacctcgagaggttggccttgaatcccagacatcatcatcgtgagttgagtt |
160412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 132796 - 132896
Alignment:
| Q |
15 |
taccggtgcatgttcttgttcggaacttgttggaagcgtattcgatgcaaacgtagggatcttgtcttgaaatccattcagtgtctttcaatttcgagca |
114 |
Q |
| |
|
|||| ||||||||| | |||||||||||||||| |||||||| | |||||| || ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
132796 |
tacctgtgcatgttttggttcggaacttgttggtcgcgtattcaaggcaaacataaggatcttgtcttgaaatccattctgtgtctttcaatttcgagca |
132895 |
T |
|
| Q |
115 |
a |
115 |
Q |
| |
|
| |
|
|
| T |
132896 |
a |
132896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University