View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5142-Insertion-1 (Length: 467)
Name: NF5142-Insertion-1
Description: NF5142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5142-Insertion-1 |
 | |
|
| [»] scaffold0341 (3 HSPs) |
| |
|
| [»] chr1 (16 HSPs) |
| |
|
Alignment Details
Target: scaffold0341 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Original strand, 11868 - 12328
Alignment:
| Q |
8 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
11868 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttg |
11967 |
T |
|
| Q |
108 |
cagttccttccttccaatttctccatgcctgcacaaatctacccaaatgcaaatactactctttgttagatataatttcacttctaaagatgaaagatat |
207 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11968 |
cagtcccttccttccaatttctccatgcctgcacaaatttacccaaatgcaaatactactctttgttagatataatttcacttctaaacatgaaagatat |
12067 |
T |
|
| Q |
208 |
gacgacatgaaaagtatgacttacaaagcttgagagatattctgtattct-cccatcacgaatgccactgttttttgcaccacttacaatttctaaaacc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12068 |
gacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccccatcacgaatgccactgttttttgcaccacttacaatttctaaaacc |
12167 |
T |
|
| Q |
307 |
aatataccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccatatatccactacaaaacaatatgggagttaagc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12168 |
aatataccaaaactaaagacatcggattttactgaaaactgtccttgcattacatactcaggtgccatatatccactacaaaacaatatgggagttaagc |
12267 |
T |
|
| Q |
407 |
taaattaagcaaaatattttcacttatcttcaagtttctactaacttgcataaagtaattt |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
12268 |
taaattaagcaaaatattttcacttatcttcaactttctactaacttgcataaactaattt |
12328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 4212 - 4399
Alignment:
| Q |
8 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4212 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttg |
4311 |
T |
|
| Q |
108 |
cagttccttccttccaatttctccatgcctgcacaaatctacccaaatgcaaatactactctttgttagatataatttcacttctaaa |
195 |
Q |
| |
|
|||| || || |||||||||||||||||| ||||||| || ||| ||||| ||| | ||| |||||||||||||| |||||||||| |
|
|
| T |
4312 |
cagtcccctctctccaatttctccatgcctacacaaatttatccagatgcatatatcattctatgttagatataattccacttctaaa |
4399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 217 - 393
Target Start/End: Original strand, 4452 - 4629
Alignment:
| Q |
217 |
aaaagtatgacttacaaagcttgagagatattctgtattctccc-atcacgaatgccactgttttttgcaccacttacaatttctaaaaccaatatacca |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||| | ||||||||||||| |
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|
| T |
4452 |
aaaattatgacttacaaagcttgagagatattctgtattctccccatcacgaatgctactatttttagcaccacttacaatttcaagaaccaatatacca |
4551 |
T |
|
| Q |
316 |
aaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccatatatccactacaaaacaat |
393 |
Q |
| |
|
||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4552 |
aaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgccatatatccgctacaaaacaat |
4629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Original strand, 6510188 - 6510648
Alignment:
| Q |
8 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| | || ||||||||| |||||| |
|
|
| T |
6510188 |
ctagctacattctcttgaacacaaagtaatccaatatgaatacatctaaaaatttcatttcgtgaatcattgtttaaagtagaatctatgataattgttg |
6510287 |
T |
|
| Q |
108 |
cagttccttccttccaatttctccatgcctgcacaaatctacccaaatgcaaatactactctttgttagatataatttcacttctaaagatgaaagatat |
207 |
Q |
| |
|
|||| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6510288 |
cagtaccatcaatccaatttctccatgcctgcacaaatttacccaaatgcaaatactactctttgttagatataatttcacttctaaacatgaaagatat |
6510387 |
T |
|
| Q |
208 |
gacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccc-atcacgaatgccactgttttttgcaccacttacaatttctaaaacc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510388 |
gacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccccatcacgaatgccactgttttttgcaccacttacaatttctaaaacc |
6510487 |
T |
|
| Q |
307 |
aatataccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccatatatccactacaaaacaatatgggagttaagc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510488 |
aatataccaaaactaaagacatcggattttactgaaaactgtccttgcattacatactcaggtgccatatatccactacaaaacaatatgggagttaagc |
6510587 |
T |
|
| Q |
407 |
taaattaagcaaaatattttcacttatcttcaagtttctactaacttgcataaagtaattt |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
6510588 |
taaattaagcaaaatattttcacttatcttcaactttctactaacttgcataaactaattt |
6510648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 8 - 393
Target Start/End: Original strand, 6497202 - 6497591
Alignment:
| Q |
8 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| | | ||||||||| |||||| |
|
|
| T |
6497202 |
ctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttg |
6497301 |
T |
|
| Q |
108 |
cagttccttccttccaatttctccatgcctgcacaaatctacccaaatgcaaatactactctttgttagatataatttcacttctaaagatgaaagatat |
207 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||| | ||||| ||||||| | || |||||||||||| |||||||| | ||||| |||| |
|
|
| T |
6497302 |
cagttccctccttccaattcctccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataata-cacttctaca--tgaaatatat |
6497398 |
T |
|
| Q |
208 |
gacgac------atgaaaagtatgacttacaaagcttgagagatattctgtattctcc-catcacgaatgccactgttttttgcaccacttacaatttct |
300 |
Q |
| |
|
|| ||| || ||||||||||||||||||||| || ||||| || ||||||||| |||| ||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
6497399 |
gatgacgatgacataaaaagtatgacttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttca |
6497498 |
T |
|
| Q |
301 |
aaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccatatatccactacaaaacaat |
393 |
Q |
| |
|
| |||||||||||| ||||| || ||||| || || |||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
6497499 |
agaaccaatataccgaaactgaatacatccgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaaacaat |
6497591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 217 - 393
Target Start/End: Original strand, 6502773 - 6502950
Alignment:
| Q |
217 |
aaaagtatgacttacaaagcttgagagatattctgtattctccc-atcacgaatgccactgttttttgcaccacttacaatttctaaaaccaatatacca |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||| | ||||||||||||| |
|
|
| T |
6502773 |
aaaattatgacttacaaagcttgagagatattctgtattctccccatcacgaatgctactatttttagcaccacttacaatttcaagaaccaatatacca |
6502872 |
T |
|
| Q |
316 |
aaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccatatatccactacaaaacaat |
393 |
Q |
| |
|
||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6502873 |
aaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgccatatatccgctacaaaacaat |
6502950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 200 - 458
Target Start/End: Original strand, 6514779 - 6515039
Alignment:
| Q |
200 |
aaagatatgacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccc-atcacgaatgccactgttttttgcaccacttacaattt |
298 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||||| ||||||||||| |||||||||| |||||| ||| ||| ||||||| |||||||||||||| |
|
|
| T |
6514779 |
aaagatatgattgcatgacaattatgacttacaaagctcgagagatattccgtattctccccatcacggatgtaactattttttgtaccacttacaattt |
6514878 |
T |
|
| Q |
299 |
ctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccatatatccactacaaaacaatatgg- |
397 |
Q |
| |
|
| | ||| ||||||||||||||||||||||| |||||| |||||| ||||| ||| | ||||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
6514879 |
caagaactaatataccaaaactaaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccatatacccactacataacaatatgga |
6514978 |
T |
|
| Q |
398 |
gagttaagctaaattaagcaaaatattttcacttatcttcaagtttctactaacttgcata |
458 |
Q |
| |
|
|||| |||||||||||| |||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
6514979 |
tagttcagctaaattaagaaaaatatttttacttatcttcaactttctactaacttgcata |
6515039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 6502542 - 6502721
Alignment:
| Q |
16 |
attctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttgcagttcct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
6502542 |
attctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccc |
6502641 |
T |
|
| Q |
116 |
tccttccaatttctccatgcctgcacaaatctacccaaatgcaaatactactctttgttagatataatttcacttctaaa |
195 |
Q |
| |
|
|| |||||||||||||||||| ||||||| || ||| ||||| ||| | ||| |||||||||||||| |||||||||| |
|
|
| T |
6502642 |
tctctccaatttctccatgcctacacaaatttatccagatgcatatatcattctatgttagatataattccacttctaaa |
6502721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 6514552 - 6514689
Alignment:
| Q |
8 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| |||| |||||||||||| | | ||||||||||||| || |
|
|
| T |
6514552 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatctcattatctcatttagtgagtcattgtttaatgttggatctatgatatttgctg |
6514651 |
T |
|
| Q |
108 |
cagttccttccttccaatttctccatgcctgcacaaat |
145 |
Q |
| |
|
|||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
6514652 |
cagtcccctccttccaatttctccatgcctacacaaat |
6514689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 285 - 383
Target Start/End: Complemental strand, 47775427 - 47775329
Alignment:
| Q |
285 |
accacttacaatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccatatatccact |
383 |
Q |
| |
|
|||||||| ||| || | |||||||| || |||||||||||||| |||||||| ||||| ||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
47775427 |
accacttaaaatctcaagaaccaatactccgaaactaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatatatccact |
47775329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 388
Target Start/End: Complemental strand, 6525657 - 6525528
Alignment:
| Q |
259 |
ccatcacgaatgccactgttttttgcaccacttacaatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccgtgcatta |
358 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| ||| || | || ||||| |||||||||||| ||||| || || |||||||| ||||| |||||| |
|
|
| T |
6525657 |
ccatgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattg |
6525558 |
T |
|
| Q |
359 |
catactcaggtgccatatatccactacaaa |
388 |
Q |
| |
|
||||||| ||||||||||||||||| |||| |
|
|
| T |
6525557 |
catactccggtgccatatatccactgcaaa |
6525528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 285 - 380
Target Start/End: Complemental strand, 47771329 - 47771234
Alignment:
| Q |
285 |
accacttacaatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccatatatcc |
380 |
Q |
| |
|
|||||||| ||| || | |||||||| ||||| ||||||||||| |||||||| ||||| ||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
47771329 |
accacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatcc |
47771234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 47771598 - 47771525
Alignment:
| Q |
12 |
ctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaat |
85 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| ||||| | |||||||||| |||| |||||||||| |
|
|
| T |
47771598 |
ctacattttcttgaacacaaagtaagccaatatggatgcatctcattatttcatttgctgaaatattgtttaat |
47771525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 47775750 - 47775677
Alignment:
| Q |
12 |
ctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaat |
85 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||| | |||||||||| |||| |||||||||| |
|
|
| T |
47775750 |
ctacattttcttgaacacaaagtaaggcaatatggatacatctcattatttcatttgctgaaatattgtttaat |
47775677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 6525956 - 6525879
Alignment:
| Q |
8 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaat |
85 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||| ||||| ||||| | |||||| || |||||||||||||||| |
|
|
| T |
6525956 |
ctagctgcattttcttgaacacaaagtaacccaatgtggatgcatctcattatttcgttcactgaatcattgtttaat |
6525879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 383
Target Start/End: Original strand, 47743674 - 47743771
Alignment:
| Q |
286 |
ccacttacaatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccatatatccact |
383 |
Q |
| |
|
||||||| ||| || ||||| | || |||||||||||| ||||| |||||||| ||||| | ||| |||| |||||||||| |||||||||||||| |
|
|
| T |
47743674 |
ccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccact |
47743771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 383
Target Start/End: Original strand, 47758075 - 47758172
Alignment:
| Q |
286 |
ccacttacaatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccatatatccact |
383 |
Q |
| |
|
||||||| ||| || ||||| | || |||||||||||| ||||| |||||||| ||||| | ||| |||| |||||||||| |||||||||||||| |
|
|
| T |
47758075 |
ccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccact |
47758172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 385
Target Start/End: Original strand, 47711197 - 47711296
Alignment:
| Q |
286 |
ccacttacaatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccatatatccactac |
385 |
Q |
| |
|
||||||| ||| || ||||| |||| ||||||||||| ||||| |||||||| ||||| | ||| | |||||||||| || |||||||||||||||| |
|
|
| T |
47711197 |
ccacttataatctccaaaactaatactccaaaactaaaaacatctgattttaccgaaaattctccaaaccttacatactcgggagccatatatccactac |
47711296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 47700942 - 47701015
Alignment:
| Q |
313 |
ccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccatatatccactaca |
386 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| ||||| |||| |||| || ||||||||||||||||||| |
|
|
| T |
47700942 |
ccaaaactaaaaacatccgatttgactgaaaattgtccaaacattgcatattcgagtgccatatatccactaca |
47701015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 312 - 386
Target Start/End: Original strand, 28859789 - 28859863
Alignment:
| Q |
312 |
accaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccatatatccactaca |
386 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| | ||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28859789 |
accaaaactaaagacatctgatttcactgaaaattctccatgcattacatactcaggtgccatatatccgctaca |
28859863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 386
Target Start/End: Original strand, 28854402 - 28854476
Alignment:
| Q |
312 |
accaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccatatatccactaca |
386 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| | ||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
28854402 |
accaaaactgaagacatctgattttactgaaaattctccatgcattacatactcaggtgccatatacccgctaca |
28854476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 386
Target Start/End: Original strand, 28828701 - 28828775
Alignment:
| Q |
312 |
accaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccatatatccactaca |
386 |
Q |
| |
|
|||||||| ||||||||| ||||| || ||||| | ||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28828701 |
accaaaaccaaagacatctgatttcaccgaaaattctccatgcattacatactcaggtgccatgtatccactaca |
28828775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 313 - 383
Target Start/End: Original strand, 27368344 - 27368414
Alignment:
| Q |
313 |
ccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccatatatccact |
383 |
Q |
| |
|
||||||||| ||||||| |||||||| ||||| | ||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
27368344 |
ccaaaactatagacatctgattttaccgaaaattctccatgcatcgcatactcaggtgccatatatccact |
27368414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 28874400 - 28874444
Alignment:
| Q |
342 |
aaactgtccgtgcattacatactcaggtgccatatatccactaca |
386 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28874400 |
aaactctccatgcattacatactcaggtgccatatatccgctaca |
28874444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 28826853 - 28826984
Alignment:
| Q |
9 |
tagctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttgc |
108 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| |||||||| || ||||| | |||||||||| |||| |||| ||||| | ||||| ||||||| || |
|
|
| T |
28826853 |
tagctacattgtcttggacacatagtaagccaatatgaatgcatctcatgatttcatttcttgaactgttgtataataatggatctataatatttgcagc |
28826952 |
T |
|
| Q |
109 |
agttccttccttccaatttctccatgcctgca |
140 |
Q |
| |
|
||| ||||| ||||| ||||||||||||||| |
|
|
| T |
28826953 |
tgtttcttccctccaacttctccatgcctgca |
28826984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 28843804 - 28843869
Alignment:
| Q |
8 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaa |
73 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||||| || ||||| | |||||||||| |||| |
|
|
| T |
28843804 |
ctagctacattgtcttgcacacaaagtaacccaatatgaatgcatctcatgatttcatttcttgaa |
28843869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 383
Target Start/End: Complemental strand, 11225354 - 11225257
Alignment:
| Q |
286 |
ccacttacaatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccgtgcattacatactcaggtgccatatatccact |
383 |
Q |
| |
|
||||||| ||| || ||||| | || |||||||||||| ||||| |||||||| ||||| | ||| |||| |||||||||| |||||||||||||| |
|
|
| T |
11225354 |
ccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccact |
11225257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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