View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5142_high_1 (Length: 329)
Name: NF5142_high_1
Description: NF5142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5142_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 22 - 324
Target Start/End: Original strand, 40658907 - 40659209
Alignment:
| Q |
22 |
tgtaacatcaggaaatccaattcgggatgacactgacccctgctaaaccactttcaaccatggtaattaagttcctcgaaaggttgtcacaggtatccca |
121 |
Q |
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| T |
40658907 |
tgtaacatcaggaaatccaattcgggatgacactgacccctgctaaaccactttcaaccatggtaattaagttcctcgaaaggttgtcacaggtatccca |
40659006 |
T |
|
| Q |
122 |
atgacagtgtgacatgtgtccatgttcgatgacatcaacgtcgttatctccaatctgacggagatgttgattatggcatgtcccctggaaccgtctttac |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40659007 |
atgacagtgtgacatgtgtccatgttcgatgacatcaatgtcgttatctccaatctgacggagatgttgattatggcatgtcccctggaaccgtctttac |
40659106 |
T |
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| Q |
222 |
ctcgtagccggtaactcaggtaccgaactgagccaggtgtaagaaggccgatatctgaagcgggaataaaacaccacccaagttgagcctgccctatgct |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |
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| T |
40659107 |
ctcgtagccggtaactcaggtaccgaactgagccaggtgtaagaaggccgatatctgaagccggaataaaacaccacccaagttgagcctgccccatgat |
40659206 |
T |
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| Q |
322 |
tct |
324 |
Q |
| |
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||| |
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| T |
40659207 |
tct |
40659209 |
T |
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