View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5142_high_10 (Length: 305)
Name: NF5142_high_10
Description: NF5142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5142_high_10 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 28101336 - 28101039
Alignment:
| Q |
8 |
caccacagactcgaataatacaaactgttgcaggagacggtagaaacaaactgcaggccaaaaaaccagattactctagagcaaaacagaaacacatcat |
107 |
Q |
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| T |
28101336 |
caccacagactcgaataatacaaacagttgcaggagacggcagaaacaaactgcaggcgaaccaaccagattactctagagcaaaacagaaacacaacat |
28101237 |
T |
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| Q |
108 |
aggctagaagaacaaccaagcagcagcctccgtacctcacaattttgaaacatcgctaaaagccacatagaactactaccgagaatcaattaaggaatta |
207 |
Q |
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| T |
28101236 |
gggctagaagaacaaccaagcagcagcctccgtacctcacaattttgaaacatcgctaaaaaccacatagaactactaccgagaagcaattaaggaatta |
28101137 |
T |
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| Q |
208 |
gaccatgacagaaacaaactcaacaaatcgcagcatcccaaagaactcaacccctcgccacattgaaaagtgagataaattagttgaccatacacctt |
305 |
Q |
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| T |
28101136 |
gaccatgacagaaacaaactcaacaaatcgcagcatcccaaagaactcaccccctcgccacattgaaaagtgagataaattagttgaccatacacctt |
28101039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 28104095 - 28103872
Alignment:
| Q |
8 |
caccacagactcgaataatacaaactgttgcaggagacggtagaaacaaactgcaggccaaaaaaccagattactctagagcaaaacagaaacacat-ca |
106 |
Q |
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|||||| ||||||||||| |||||||| ||||| ||| || | |||||||||||||| || ||||||||| ||| |||| |||||| |||| || |
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| T |
28104095 |
caccactgactcgaataacacaaactgatgcagcagatggaaaaaacaaactgcaggtgaaccaaccagatttctcaagagtaaaacataaacgtggaca |
28103996 |
T |
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| Q |
107 |
taggctagaagaacaaccaagcagcagcctccgtacctcacaattttgaaacatcgctaaaagccacatagaactactaccgagaatcaattaaggaatt |
206 |
Q |
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| T |
28103995 |
taggctagaagaataaccaagcatcagcctccgcacctcacaattctgaaacaatgctaaaatccacatagaactactaccgagaaccggtcaaagaagc |
28103896 |
T |
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| Q |
207 |
agaccatgacagaaacaaactcaa |
230 |
Q |
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| T |
28103895 |
agcccttgacagaaacaaactcaa |
28103872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 26641021 - 26640877
Alignment:
| Q |
8 |
caccacagactcgaataatacaaactgttgcaggagacggtagaaacaaactgcaggccaaaaaaccagattactctagagcaaaacagaaacac-atca |
106 |
Q |
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|||||| ||||| |||||||||||||| ||||| ||| || ||||||||||||||||| || ||||||||||||| |||| |||||| |||| | || |
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| T |
26641021 |
caccactgactcaaataatacaaactgatgcagcagatggaagaaacaaactgcaggcgaaccaaccagattactccagagaaaaacataaacgcggaca |
26640922 |
T |
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| Q |
107 |
taggctagaagaacaaccaagcagcagcctccgtacctcacaatt |
151 |
Q |
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| T |
26640921 |
caggctagaagaacaaccaagcagcagcctctgtgcctcacaatt |
26640877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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