View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5142_high_12 (Length: 303)
Name: NF5142_high_12
Description: NF5142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5142_high_12 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 80 - 303
Target Start/End: Original strand, 7413385 - 7413608
Alignment:
| Q |
80 |
tttattttattcaaaacatcatcatcttctaactctttgttgtccttttgtgttattcaacgcagttagtaatccttttagttgcctaatctctcattcc |
179 |
Q |
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| T |
7413385 |
tttattttatccaaaacatcatcatcttctaactctttgttgtccctttgtgttattcaacgcagttagtaatccttttagttgcctaatctcccattcc |
7413484 |
T |
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| Q |
180 |
aacttttgtttcatatcagttgtcttacacgcttaataaattcaacatggagctgttctttttctctctgtataaattgatattcaaatgacataaatat |
279 |
Q |
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| T |
7413485 |
aacttttgtttcatatcagttgtcttacaagcttaatgaattcaacatggagctgttctttttctctctgtataaattgatattcaaatgacataaatac |
7413584 |
T |
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| Q |
280 |
tatgctatcttaacctaacaaaca |
303 |
Q |
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| T |
7413585 |
tatgctatcttaacctaacaaaca |
7413608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 7413379 - 7413082
Alignment:
| Q |
11 |
atcatttggttcaactcttcgcatgcttgaaggaactcttgcttttccttcaattccatctgcaagtactttattttattcaaaa-catcatcatcttct |
109 |
Q |
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| T |
7413379 |
atcatttggttcaggccctcgcaggcttgaagtaactcttccttttctttcaattccatctgcaaagaatttattttatccaaaaacttcatcatcttct |
7413280 |
T |
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| Q |
110 |
aactctttgttgtccttttgtgttattcaacgcagttagtaatccttttagttgcctaatctctcattccaacttttgtttcatat-cagttgtcttaca |
208 |
Q |
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| T |
7413279 |
aaatctttcttgtccctt-gtgttattcaacgcagttagtgatccttttagttgcccaatcactcattcaaacttttgtttcatatccagttgtcttaca |
7413181 |
T |
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| Q |
209 |
cgcttaataaattcaacatggagctgttctttt---tctctctgtataaattgatattcaaatgacataaatattatgct-atcttaacctaacaaaca |
303 |
Q |
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| T |
7413180 |
agcttaacgaattcaacatggagctattcttttttctctctttgtataaattgatattcaaatggcataaatactatgctaattttaacctaacaaaca |
7413082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 132 - 303
Target Start/End: Complemental strand, 30495734 - 30495558
Alignment:
| Q |
132 |
ttattcaacgcagttagtaatccttttagttgcctaatctctcattccaacttttgtttcatat-cagttgtcttacacgcttaataaattcaacatgga |
230 |
Q |
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| T |
30495734 |
ttattcaacacaattagtgatccttttagttgcccaatctcccattccaacttttgtttcatatccagttgtcttacaagcttaacgaattcaacatgaa |
30495635 |
T |
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| Q |
231 |
gctgttc-tttttctctctg--tataaattgatattcaaatgacataaatattatgctatc-ttaacctaacaaaca |
303 |
Q |
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| T |
30495634 |
gttgttcttttttctccctgtatataaattgatatttgaatgacataaatactatgctaacgttgacctaacaaaca |
30495558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 266
Target Start/End: Complemental strand, 30447068 - 30446936
Alignment:
| Q |
135 |
ttcaacgcagttagtaatccttttagttgcctaatctctcattccaacttttgtttcatatc-agttgtcttacacgcttaataaattcaacatggagct |
233 |
Q |
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| T |
30447068 |
ttcaacacacttagtgatccttttagttgctgaatctccagttccagcttttgtttcatatccagttgtctttcaagctgaatgattttagcatggagct |
30446969 |
T |
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| Q |
234 |
gttctttttctctctgtataaattgatattcaa |
266 |
Q |
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| T |
30446968 |
gttctttttgtttctgtataaatagaaattcaa |
30446936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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