View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5142_high_4 (Length: 339)
Name: NF5142_high_4
Description: NF5142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5142_high_4 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 2 - 324
Target Start/End: Complemental strand, 31564648 - 31564316
Alignment:
| Q |
2 |
atatgactgtataagttcaaatacatcagtccacaagaggcaaaacaatatgagaagatgggcaaaatggaagtataattcattttttctcttttacat- |
100 |
Q |
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|||||| |||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31564648 |
atatgagtgtataagttcaaatatatcaatccacaagaggcaaaacaatatgaaaagatgggcaaaatggaagtataattaattttttctcttttacatt |
31564549 |
T |
|
| Q |
101 |
-----gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaaca----gcaaataa |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31564548 |
tacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaacattaagcaaataa |
31564449 |
T |
|
| Q |
192 |
gatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgca |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31564448 |
gatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgca |
31564349 |
T |
|
| Q |
292 |
acttcttcatcttcaacttgtactaccacaggt |
324 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
31564348 |
acttcttcatcttcaacttgtactaccacaggt |
31564316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 33416366 - 33416536
Alignment:
| Q |
65 |
aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt |
162 |
Q |
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|||||||||||||| | || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| | |
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| T |
33416366 |
aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat |
33416465 |
T |
|
| Q |
163 |
agaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcctttgtctgaag |
229 |
Q |
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|||||||| ||||| |||| ||||||||||||||||| |||||| ||||||||||||| ||||||| |
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| T |
33416466 |
agaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagccttcatctgaag |
33416536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 315
Target Start/End: Original strand, 33385707 - 33385837
Alignment:
| Q |
186 |
aaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttg-tctcggatgc |
284 |
Q |
| |
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|||||||||||||||| |||| || ||| |||||| ||||| | ||||| ||||||||||||||||| ||||||| | ||||||||| | | |||| |
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| T |
33385707 |
aaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgttttttaatgc |
33385806 |
T |
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| Q |
285 |
aattgcaacttcttcatcttcaacttgtact |
315 |
Q |
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|||||||||||||||| |||||||||||||| |
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| T |
33385807 |
aattgcaacttcttcaccttcaacttgtact |
33385837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 33281320 - 33281376
Alignment:
| Q |
241 |
gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca |
300 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| |
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| T |
33281320 |
gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca |
33281376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 33416538 - 33416592
Alignment:
| Q |
258 |
agataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgt |
312 |
Q |
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|||||||||| ||||||| || |||||||||||||| ||||||||||||||||| |
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| T |
33416538 |
agataagttgctgtttgtttcagatgcaattgcaaccgcttcatcttcaacttgt |
33416592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 33301947 - 33302003
Alignment:
| Q |
241 |
gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca |
300 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||| ||||| |||||| |
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| T |
33301947 |
gtttgtccattagaattagata---tgatgtttgtctcggatgcaatagcaacctcttca |
33302003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 30653360 - 30653203
Alignment:
| Q |
66 |
aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtaga |
165 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||||| | |||||||| || |
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| T |
30653360 |
aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga |
30653262 |
T |
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| Q |
166 |
aaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt |
220 |
Q |
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|
|||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| |
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| T |
30653261 |
aaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt |
30653203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 312
Target Start/End: Complemental strand, 17443503 - 17443374
Alignment:
| Q |
183 |
agcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggat |
282 |
Q |
| |
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||||||||||||||||||| |||| || || |||||| ||||||| ||||||| ||||||||||||||| ||||||| | |||||||| || || |
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| T |
17443503 |
agcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttcaaat |
17443404 |
T |
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| Q |
283 |
gcaattgcaacttcttcatcttcaacttgt |
312 |
Q |
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|||||||||||||||||| |||||||||| |
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| T |
17443403 |
gcaattgcaacttcttcacgttcaacttgt |
17443374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 12932 - 12876
Alignment:
| Q |
241 |
gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca |
300 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| |
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|
| T |
12932 |
gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca |
12876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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