View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5142_high_6 (Length: 313)
Name: NF5142_high_6
Description: NF5142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5142_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 34231984 - 34231678
Alignment:
| Q |
1 |
ataatgaccatagattctgtgaagaatatttttagggacaaaagcataatgaatggggacgtgccttttacc---tattcataccatcttggattttgaa |
97 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| |||| |
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| T |
34231984 |
ataatgaccatagattctatgaagaatatttttagggacaaaagaataatgaatggggacgtgtcttttaccacctattcataccatcttggattatgaa |
34231885 |
T |
|
| Q |
98 |
tagtggtttatagctagttcatatatatccatatatagacattatggattctgtatgattgtgtcnnnnnnncgggattctatatgatcatgaactaacg |
197 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34231884 |
tagtggtttatagctagttcatatatatccataaatagacattatggattctgtatgattgtgtcaaaaaaacgggattctatatgatcatgaactaaca |
34231785 |
T |
|
| Q |
198 |
ccgtgtcaaatttaagcatgctaattttgagtaggcctagtacactatagtcctcgtgactatctaaatcaaacatggtaaagttagcaacacacatcta |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34231784 |
ccgtgtcaaatttaagcatgctaattttgagtaggcctagtacactatagtcctcgtgactatctaaatcaaacatggtaaagttagcaacacacatcta |
34231685 |
T |
|
| Q |
298 |
gaataat |
304 |
Q |
| |
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||||||| |
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|
| T |
34231684 |
gaataat |
34231678 |
T |
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