View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5142_high_8 (Length: 312)
Name: NF5142_high_8
Description: NF5142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5142_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 144 - 302
Target Start/End: Complemental strand, 1760136 - 1759971
Alignment:
| Q |
144 |
cctgtgaagtagcaaattttctcttgcaaaataaacatgaaaaagaccttgaatccaaatttttctctttgttcttgttctaattttcatctttcccttc |
243 |
Q |
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| T |
1760136 |
cctgtgaagtagtaaattttctcttgcaaaataaacatgaaaaagaccttgaatccaaatttttctctttgttcttgttctaattttcatctttctcttc |
1760037 |
T |
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| Q |
244 |
tttgttgttatttggaaaa-------atgaaccaactttcttactctcttcctcttccgctctctg |
302 |
Q |
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| T |
1760036 |
tttgttgttatttggaaaaccagatgatgaaccaactttcttactctcttcctcttccgctctctg |
1759971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 1739080 - 1738973
Alignment:
| Q |
149 |
gaagtagcaaattttctcttgcaaaataaacatgaaaaagaccttgaatccaaatttttctctttgttcttgttctaattttcatctttcccttctttgt |
248 |
Q |
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| T |
1739080 |
gaagtagaaaattttcccttgcaaaataagcatgaaaaagtccttgaatccatttttttctcctcattcttgttc------tcatctttccctttattgt |
1738987 |
T |
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| Q |
249 |
tgttatttggaaaa |
262 |
Q |
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| T |
1738986 |
tgttatttggaaaa |
1738973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 1744426 - 1744360
Alignment:
| Q |
146 |
tgtgaagtagcaaattttctcttgcaaaataaacatgaaaaagaccttgaatccaaatttttctctt |
212 |
Q |
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| T |
1744426 |
tgtgaagtagaaaattttcccttgcaaaataagcatgaaaaagaccttgaatccatttttttctctt |
1744360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 1724496 - 1724448
Alignment:
| Q |
144 |
cctgtgaagtagcaaattttctcttgcaaaataaacatgaaaaagacct |
192 |
Q |
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| T |
1724496 |
cctgtgaagtagaaaattttctcttgcaaaataagcatgaaaaagacct |
1724448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 47117006 - 47117137
Alignment:
| Q |
3 |
tcgatcaccttttaacgattatttttaatttcttgttttgtagatggataggcggagaatgtatgataggcaacaaagctcaacgggaacgccaacatca |
102 |
Q |
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| T |
47117006 |
tcgatcaccttttaacgattatttttaatttcttgttttgtagatggataggcggagaatgtatgataggcaacaaagctcaacgggaacgccaacatca |
47117105 |
T |
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| Q |
103 |
ccatcttcgccggtgatgatgtcgccagtgaa |
134 |
Q |
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| T |
47117106 |
ccgtcttcaccggtgatgatgtcgccattgaa |
47117137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 2022851 - 2022788
Alignment:
| Q |
149 |
gaagtagcaaattttctcttgcaaaataaacatgaaaaagaccttgaatccaaatttttctctt |
212 |
Q |
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| T |
2022851 |
gaagtagaaaattttctcttgcaaaaacaacatgaaaaagactttgaatctgaattcttctctt |
2022788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 3156968 - 3157034
Alignment:
| Q |
146 |
tgtgaagtagcaaattttctcttgcaaaataaacatgaaaaagaccttgaatccaaatttttctctt |
212 |
Q |
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| T |
3156968 |
tgtgaagtagaaaattgtctcttacaaaaggagcatgaaaaagaccttgaatccgaattcttctctt |
3157034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 3167302 - 3167250
Alignment:
| Q |
146 |
tgtgaagtagcaaattttctcttgcaaaataaacatgaaaaagaccttgaatc |
198 |
Q |
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||||| |||| |||||||||||||||||| |||||||||||||| ||||||| |
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| T |
3167302 |
tgtgatgtagaaaattttctcttgcaaaaacaacatgaaaaagactttgaatc |
3167250 |
T |
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