View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5142_high_9 (Length: 306)
Name: NF5142_high_9
Description: NF5142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5142_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 47117006 - 47117137
Alignment:
| Q |
3 |
tcgatcaccttttaacgattatttttaatttcttgttttgtagatggataggcggagaatgtatgataggcaacaaagctcaacgggaacgccaacatca |
102 |
Q |
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| T |
47117006 |
tcgatcaccttttaacgattatttttaatttcttgttttgtagatggataggcggagaatgtatgataggcaacaaagctcaacgggaacgccaacatca |
47117105 |
T |
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| Q |
103 |
ccatcttcgccggtgatgatgtcgccagtgaa |
134 |
Q |
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| T |
47117106 |
ccgtcttcaccggtgatgatgtcgccattgaa |
47117137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 140 - 265
Target Start/End: Original strand, 14539252 - 14539377
Alignment:
| Q |
140 |
agaacctgtgaaaagctgttatcttttattagcattttcattaaattaaattttttcacttggaatcagggacatatgcatgttgctttatgtgtgggcc |
239 |
Q |
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| T |
14539252 |
agaacctgtgaaaagctattatcttttattagcattttcattaaattaaattttttcacttggaatcagggacaaatgcatgttgctttatgtgtgggct |
14539351 |
T |
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| Q |
240 |
tgtgcctacacaaaatttttagaaac |
265 |
Q |
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| T |
14539352 |
tgtgcctacacaaaatttttagaaac |
14539377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 265
Target Start/End: Original strand, 18250689 - 18250751
Alignment:
| Q |
203 |
aatcagggacatatgcatgttgctttatgtgtgggcctgtgcctacacaaaatttttagaaac |
265 |
Q |
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| T |
18250689 |
aatcagggacggatgcatgttgggatatgtgtgggcttgtgactacacaaaatttttagaaac |
18250751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 31339746 - 31339792
Alignment:
| Q |
219 |
atgttgctttatgtgtgggcctgtgcctacacaaaatttttagaaac |
265 |
Q |
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| T |
31339746 |
atgttggttcatgtgtgggcttgtgcctacacaaaatttttagaaac |
31339792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 7729591 - 7729627
Alignment:
| Q |
229 |
atgtgtgggcctgtgcctacacaaaatttttagaaac |
265 |
Q |
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| T |
7729591 |
atgtgtgggcttgtgcctacacaaaaattttagaaac |
7729627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 13029123 - 13029086
Alignment:
| Q |
228 |
tatgtgtgggcctgtgcctacacaaaatttttagaaac |
265 |
Q |
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| T |
13029123 |
tatgtgtgggcttgtgcctacacaaaaattttagaaac |
13029086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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