View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143-Insertion-1 (Length: 921)
Name: NF5143-Insertion-1
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 7 - 559
Target Start/End: Complemental strand, 42379992 - 42379436
Alignment:
| Q |
7 |
acaaacaactgattgcaaaaataacctaatcttagttgccatggccaaacattataaccacttgagcatttattgaaaatctcaactcagaaggcaacgg |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42379992 |
acaaacaactgattgcaaaaataacctaatcttagttgccatggccaaacattataaccacttgagcatttaatgaaaatctcaactcagaaggcaacgg |
42379893 |
T |
|
| Q |
107 |
tgtttcacataacacagcctgtgtgtttagagcttccctaaatttttaacacctttgcaaaagacaaagaataaactgccaactattttatatccgacca |
206 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42379892 |
tgtttcacataacacatcctgtgtgtttagagcttccctaaatttttaacacctttgcaaaagacaaagaataaactgccaactattttatatccgacca |
42379793 |
T |
|
| Q |
207 |
ggtaaattaatggataaaagcacagcctagggggaaatcccccnnnnnnnnnc--taaagttaaattatggtttttgagagagtggcatnnnnnnnngag |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
42379792 |
ggtaaattaatggataaaagcacagcctagggggaaatccccaaaaaaaaatacttaaagttaaattatggtttttgagagagtggcataaaaaaa-gag |
42379694 |
T |
|
| Q |
305 |
gtgcacaatcttatacttgaaaagagacaactatgtaataacaa---caaagtcccttttcaaaaataatagtaatgtatgttgaatctatattacacaa |
401 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
42379693 |
gtgcacaatcttatacttgaaaagagacaactatgtaataacaaaaacaaagtcccttatcaaaaataatagtaatgtatgctgaatctatattacacaa |
42379594 |
T |
|
| Q |
402 |
atagaaaaatacaaacctgcatatcgtctggaagagcctctgagacagcaagagtgtaaacaccaggaacaaattttcctgcaacatataagaaaaactt |
501 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42379593 |
atagaaaaatacaaacctgcatatcgtctggaagagcctctgagacagcaagagtgtaaacaccaggaacaaattttcctgcaacatataagaaaaactt |
42379494 |
T |
|
| Q |
502 |
taatttccacatctcagttgtgtgcaagatttcaaacttcaatctagatagagattct |
559 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42379493 |
taatttccacatctcagttgtgtgcaagatttcaaacttcaatctagatagagattct |
42379436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 7 - 559
Target Start/End: Complemental strand, 42408706 - 42408150
Alignment:
| Q |
7 |
acaaacaactgattgcaaaaataacctaatcttagttgccatggccaaacattataaccacttgagcatttattgaaaatctcaactcagaaggcaacgg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42408706 |
acaaacaactgattgcaaaaataacctaatcttagttgccatggccaaacattataaccacttgagcatttaatgaaaatctcaactcagaaggcaacgg |
42408607 |
T |
|
| Q |
107 |
tgtttcacataacacagcctgtgtgtttagagcttccctaaatttttaacacctttgcaaaagacaaagaataaactgccaactattttatatccgacca |
206 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42408606 |
tgtttcacataacacatcctgtgtgtttagagcttccctaaatttttaacacctttgcaaaagacaaagaataaactgccaactattttatatccgacca |
42408507 |
T |
|
| Q |
207 |
ggtaaattaatggataaaagcacagcctagggggaaatcccccnnnnnnnnnc--taaagttaaattatggtttttgagagagtggcatnnnnnnnngag |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
42408506 |
ggtaaattaatggataaaagcacagcctagggggaaatccccaaaaaaaaatacttaaagttaaattatggtttttgagagagtggcataaaaaaa-gag |
42408408 |
T |
|
| Q |
305 |
gtgcacaatcttatacttgaaaagagacaactatgtaataacaa---caaagtcccttttcaaaaataatagtaatgtatgttgaatctatattacacaa |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
42408407 |
gtgcacaatcttatacttgaaaagagacaactatgtaataacaaaaacaaagtcccttatcaaaaataatagtaatgtatgctgaatctatattacacaa |
42408308 |
T |
|
| Q |
402 |
atagaaaaatacaaacctgcatatcgtctggaagagcctctgagacagcaagagtgtaaacaccaggaacaaattttcctgcaacatataagaaaaactt |
501 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42408307 |
atagaaaaatacaaacctgcatatcgtctggaagagcctctgagacagcaagagtgtaaacaccaggaacaaattttcctgcaacatataagaaaaactt |
42408208 |
T |
|
| Q |
502 |
taatttccacatctcagttgtgtgcaagatttcaaacttcaatctagatagagattct |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42408207 |
taatttccacatctcagttgtgtgcaagatttcaaacttcaatctagatagagattct |
42408150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 637 - 921
Target Start/End: Complemental strand, 42379358 - 42379093
Alignment:
| Q |
637 |
caccacaacaaatttctctatctctataataatatacacatttagctcacacaaatgaaaattctctccaggtgtcaatcacacaatagtcagtagccac |
736 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42379358 |
caccacaacaa-tttctctatctctataataatatacacatttagctcacacaaatgaaaattctctccaggtg----------------------ccac |
42379282 |
T |
|
| Q |
737 |
tcactaaattacatcaccagtttttaattcagaggtactaatttacatgttttgaatcaaccccaatctctttctctggcaccattctttataacaaaaa |
836 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42379281 |
tcactaaattacatcaccagtttttaattcagaggtactaatttacatgttttgaatcaaccccaatctctttctctggcaccattctttataacaaaaa |
42379182 |
T |
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| Q |
837 |
rgg-aaagctgctcacttgctcg-nnnnnnnnnccaaaattc-aatttaactggtacaatttatatcgcatt-ctcttctatccatctc |
921 |
Q |
| |
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|| |||||| |||||||||||| |||||||| |||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
42379181 |
aggaaaagcttctcacttgctcgtttttttttttcaaaattcaaatttaactggtacaatttatatcacattcctcttctatccatctc |
42379093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 637 - 921
Target Start/End: Complemental strand, 42408072 - 42407807
Alignment:
| Q |
637 |
caccacaacaaatttctctatctctataataatatacacatttagctcacacaaatgaaaattctctccaggtgtcaatcacacaatagtcagtagccac |
736 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42408072 |
caccacaacaa-tttctctatctctataataatatacacatttagctcacacaaatgaaaattctctccaggtg----------------------ccac |
42407996 |
T |
|
| Q |
737 |
tcactaaattacatcaccagtttttaattcagaggtactaatttacatgttttgaatcaaccccaatctctttctctggcaccattctttataacaaaaa |
836 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42407995 |
tcactaaattacatcaccagtttttaattcagaggtactaatttacatgttttgaatcaaccccaatctctttctctggcaccattctttataacaaaaa |
42407896 |
T |
|
| Q |
837 |
rgg-aaagctgctcacttgctcg-nnnnnnnnnccaaaattc-aatttaactggtacaatttatatcgcatt-ctcttctatccatctc |
921 |
Q |
| |
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|| |||||| |||||||||||| |||||||| |||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
42407895 |
aggaaaagcttctcacttgctcgtttttttttttcaaaattcaaatttaactggtacaatttatatcacattcctcttctatccatctc |
42407807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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