View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5143-Insertion-2 (Length: 662)

Name: NF5143-Insertion-2
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5143-Insertion-2
NF5143-Insertion-2
[»] chr2 (22 HSPs)
chr2 (214-463)||(1590757-1591007)
chr2 (8-144)||(1590551-1590687)
chr2 (522-662)||(1591064-1591200)
chr2 (355-423)||(25979251-25979319)
chr2 (355-416)||(1777467-1777528)
chr2 (355-415)||(2412428-2412488)
chr2 (355-415)||(25977869-25977929)
chr2 (355-422)||(8809588-8809656)
chr2 (355-415)||(23861751-23861811)
chr2 (355-411)||(36837778-36837834)
chr2 (355-414)||(30844548-30844607)
chr2 (258-312)||(25977973-25978027)
chr2 (355-420)||(19604919-19604984)
chr2 (355-420)||(30843638-30843703)
chr2 (355-411)||(4040216-4040272)
chr2 (355-414)||(1778790-1778849)
chr2 (355-414)||(2411262-2411321)
chr2 (355-414)||(11088680-11088739)
chr2 (355-414)||(25283272-25283331)
chr2 (246-296)||(11087170-11087220)
chr2 (355-412)||(23863050-23863107)
chr2 (359-415)||(30215816-30215872)
[»] chr8 (32 HSPs)
chr8 (214-416)||(22534580-22534783)
chr8 (248-416)||(22533315-22533483)
chr8 (355-415)||(10717120-10717180)
chr8 (355-415)||(10718448-10718508)
chr8 (355-414)||(28997993-28998052)
chr8 (355-416)||(36588220-36588281)
chr8 (355-415)||(38456730-38456790)
chr8 (355-422)||(28996826-28996893)
chr8 (355-413)||(4182623-4182681)
chr8 (355-417)||(22272270-22272332)
chr8 (357-415)||(45517962-45518020)
chr8 (359-412)||(3483635-3483688)
chr8 (355-416)||(14197823-14197884)
chr8 (355-416)||(36589387-36589448)
chr8 (355-415)||(38658480-38658540)
chr8 (359-414)||(1420446-1420501)
chr8 (355-414)||(3031543-3031602)
chr8 (97-144)||(22534435-22534482)
chr8 (355-418)||(41354467-41354530)
chr8 (355-430)||(45516382-45516456)
chr8 (359-413)||(39440426-39440480)
chr8 (355-412)||(38455449-38455506)
chr8 (355-415)||(30124223-30124283)
chr8 (355-414)||(4183979-4184038)
chr8 (258-312)||(4183881-4183935)
chr8 (367-416)||(30123150-30123199)
chr8 (390-423)||(34213520-34213553)
chr8 (355-416)||(39439922-39439983)
chr8 (355-416)||(41357366-41357427)
chr8 (355-415)||(1376934-1376994)
chr8 (355-415)||(1385555-1385615)
chr8 (355-415)||(22270942-22271002)
[»] chr3 (42 HSPs)
chr3 (219-312)||(20585387-20585480)
chr3 (355-423)||(52401008-52401076)
chr3 (355-417)||(32635591-32635653)
chr3 (355-417)||(53121299-53121361)
chr3 (355-415)||(39820604-39820664)
chr3 (70-141)||(20585206-20585279)
chr3 (355-423)||(45267296-45267364)
chr3 (355-415)||(46026075-46026135)
chr3 (355-415)||(52403124-52403184)
chr3 (355-414)||(4705681-4705740)
chr3 (362-417)||(35639504-35639559)
chr3 (355-414)||(48033058-48033117)
chr3 (355-414)||(52708617-52708676)
chr3 (355-413)||(20489358-20489416)
chr3 (355-416)||(40477374-40477435)
chr3 (355-424)||(46027417-46027486)
chr3 (359-415)||(20585648-20585704)
chr3 (355-415)||(45268570-45268630)
chr3 (355-415)||(47433809-47433869)
chr3 (359-411)||(52707539-52707591)
chr3 (355-415)||(54437467-54437527)
chr3 (355-422)||(32637188-32637255)
chr3 (355-422)||(41780808-41780875)
chr3 (355-414)||(46104343-46104402)
chr3 (355-417)||(3416492-3416554)
chr3 (363-413)||(40476222-40476272)
chr3 (355-417)||(53122471-53122533)
chr3 (355-412)||(20488368-20488425)
chr3 (355-416)||(43734041-43734102)
chr3 (355-415)||(976779-976839)
chr3 (355-422)||(9855169-9855237)
chr3 (355-411)||(22508738-22508794)
chr3 (363-415)||(42446525-42446577)
chr3 (355-414)||(43641143-43641202)
chr3 (374-416)||(44507818-44507860)
chr3 (355-389)||(46106764-46106798)
chr3 (355-413)||(48035732-48035790)
chr3 (355-412)||(39819314-39819371)
chr3 (376-416)||(3417813-3417853)
chr3 (355-411)||(50562924-50562980)
chr3 (260-296)||(50563040-50563076)
chr3 (355-411)||(50563811-50563867)
[»] chr4 (34 HSPs)
chr4 (214-296)||(55542438-55542520)
chr4 (214-295)||(3879210-3879291)
chr4 (248-416)||(3880389-3880557)
chr4 (355-420)||(33137228-33137293)
chr4 (355-415)||(19674413-19674473)
chr4 (355-415)||(45619731-45619791)
chr4 (355-414)||(22204055-22204114)
chr4 (360-419)||(32699319-32699378)
chr4 (220-295)||(41933938-41934013)
chr4 (355-414)||(42359346-42359405)
chr4 (47-144)||(3879389-3879483)
chr4 (355-415)||(45618284-45618344)
chr4 (359-416)||(34659704-34659761)
chr4 (355-415)||(3879085-3879145)
chr4 (355-423)||(42358023-42358091)
chr4 (47-138)||(55541710-55541802)
chr4 (362-415)||(41933817-41933870)
chr4 (355-411)||(16574368-16574424)
chr4 (240-312)||(17371728-17371800)
chr4 (355-421)||(40198570-40198633)
chr4 (363-411)||(41935078-41935126)
chr4 (355-415)||(54121700-54121760)
chr4 (359-414)||(19675624-19675679)
chr4 (355-414)||(22205222-22205281)
chr4 (355-418)||(47359510-47359573)
chr4 (246-296)||(29060771-29060821)
chr4 (375-416)||(5259171-5259212)
chr4 (355-416)||(17281569-17281630)
chr4 (355-416)||(17370071-17370132)
chr4 (355-416)||(29060882-29060943)
chr4 (355-416)||(55542579-55542640)
chr4 (355-411)||(17371845-17371901)
chr4 (355-415)||(30091055-30091115)
chr4 (256-296)||(55541048-55541088)
[»] scaffold0562 (3 HSPs)
scaffold0562 (214-295)||(10046-10127)
scaffold0562 (47-144)||(10225-10319)
scaffold0562 (355-415)||(9921-9981)
[»] chr1 (38 HSPs)
chr1 (355-425)||(27262897-27262967)
chr1 (355-416)||(9774888-9774949)
chr1 (355-424)||(23469969-23470038)
chr1 (355-415)||(27264216-27264276)
chr1 (355-419)||(37395628-37395692)
chr1 (355-414)||(46075050-46075109)
chr1 (355-416)||(47038864-47038925)
chr1 (355-415)||(35721100-35721160)
chr1 (355-414)||(24609919-24609978)
chr1 (355-417)||(24611117-24611179)
chr1 (355-417)||(26863857-26863919)
chr1 (355-416)||(11710551-11710612)
chr1 (355-416)||(20723688-20723749)
chr1 (359-416)||(48588965-48589022)
chr1 (359-416)||(48594052-48594109)
chr1 (359-416)||(48598663-48598720)
chr1 (355-411)||(9774040-9774096)
chr1 (355-419)||(17977559-17977623)
chr1 (355-415)||(35722285-35722345)
chr1 (355-415)||(39163024-39163084)
chr1 (355-414)||(11711254-11711312)
chr1 (355-414)||(20722472-20722531)
chr1 (355-414)||(24427369-24427428)
chr1 (355-418)||(35911888-35911951)
chr1 (246-296)||(30722235-30722285)
chr1 (355-415)||(34934747-34934807)
chr1 (356-416)||(50164401-50164461)
chr1 (355-414)||(17976761-17976820)
chr1 (355-414)||(37396840-37396899)
chr1 (355-417)||(13074574-13074636)
chr1 (214-296)||(24422634-24422716)
chr1 (355-417)||(27815438-27815500)
chr1 (355-409)||(27816720-27816774)
chr1 (365-415)||(45979506-45979556)
chr1 (367-417)||(48857197-48857247)
chr1 (263-312)||(39162928-39162977)
chr1 (355-415)||(35910652-35910711)
chr1 (355-415)||(46073884-46073944)
[»] chr5 (15 HSPs)
chr5 (355-416)||(3936576-3936637)
chr5 (355-414)||(6894010-6894069)
chr5 (355-415)||(3954051-3954111)
chr5 (355-416)||(27571129-27571190)
chr5 (355-415)||(3938060-3938120)
chr5 (355-415)||(4565392-4565452)
chr5 (355-415)||(31540495-31540555)
chr5 (361-412)||(27570058-27570109)
chr5 (355-416)||(34911828-34911889)
chr5 (360-424)||(14809153-14809217)
chr5 (361-424)||(15599755-15599818)
chr5 (355-414)||(31541622-31541681)
chr5 (248-302)||(35605463-35605517)
chr5 (355-412)||(15604058-15604114)
chr5 (355-415)||(4777639-4777699)
[»] chr7 (35 HSPs)
chr7 (355-416)||(24195605-24195666)
chr7 (355-424)||(31848144-31848213)
chr7 (355-416)||(35212066-35212127)
chr7 (355-427)||(13418937-13419009)
chr7 (355-415)||(25046240-25046300)
chr7 (355-422)||(12385707-12385774)
chr7 (355-422)||(38742173-38742240)
chr7 (355-416)||(41693643-41693704)
chr7 (355-416)||(42254956-42255017)
chr7 (355-415)||(5611507-5611567)
chr7 (355-415)||(17066424-17066484)
chr7 (355-415)||(32197909-32197969)
chr7 (355-415)||(41694955-41695015)
chr7 (362-413)||(31489942-31489993)
chr7 (355-422)||(36749247-36749314)
chr7 (355-416)||(11217071-11217132)
chr7 (256-296)||(554362-554402)
chr7 (355-415)||(12933418-12933478)
chr7 (355-415)||(24197103-24197163)
chr7 (256-296)||(31489836-31489876)
chr7 (256-312)||(32543581-32543637)
chr7 (355-411)||(32544774-32544830)
chr7 (361-416)||(554243-554298)
chr7 (364-415)||(39619800-39619851)
chr7 (221-295)||(9454236-9454310)
chr7 (246-312)||(9454860-9454926)
chr7 (355-413)||(31853549-31853607)
chr7 (359-413)||(32196685-32196739)
chr7 (383-424)||(35837914-35837955)
chr7 (361-414)||(36748198-36748250)
chr7 (247-296)||(36748316-36748365)
chr7 (383-424)||(41053832-41053873)
chr7 (355-408)||(43869912-43869965)
chr7 (359-420)||(44568320-44568381)
chr7 (257-297)||(5610275-5610315)
[»] scaffold0517 (2 HSPs)
scaffold0517 (355-419)||(11522-11586)
scaffold0517 (355-414)||(10315-10374)
[»] chr6 (24 HSPs)
chr6 (359-423)||(29291350-29291414)
chr6 (355-415)||(17517309-17517369)
chr6 (355-415)||(34998141-34998201)
chr6 (359-422)||(1974156-1974219)
chr6 (355-414)||(18810532-18810591)
chr6 (355-414)||(21165246-21165305)
chr6 (355-416)||(16995449-16995510)
chr6 (355-415)||(21953205-21953265)
chr6 (359-430)||(17516147-17516217)
chr6 (355-414)||(20897497-20897556)
chr6 (258-312)||(17000179-17000233)
chr6 (355-415)||(3276366-3276426)
chr6 (383-423)||(14656229-14656269)
chr6 (355-414)||(1972400-1972459)
chr6 (239-298)||(26421726-26421785)
chr6 (363-425)||(30253547-30253609)
chr6 (359-416)||(1171655-1171712)
chr6 (259-296)||(3279403-3279440)
chr6 (355-416)||(3279499-3279560)
chr6 (355-416)||(20391212-20391273)
chr6 (355-412)||(25440673-25440730)
chr6 (355-416)||(26421843-26421904)
chr6 (383-423)||(12757601-12757641)
chr6 (355-415)||(34995113-34995173)
[»] scaffold0001 (2 HSPs)
scaffold0001 (355-420)||(120985-121050)
scaffold0001 (355-414)||(119593-119652)
[»] scaffold0106 (2 HSPs)
scaffold0106 (355-415)||(30907-30967)
scaffold0106 (355-415)||(29728-29788)
[»] scaffold0002 (5 HSPs)
scaffold0002 (355-415)||(345897-345957)
scaffold0002 (248-312)||(376261-376325)
scaffold0002 (355-415)||(344936-344996)
scaffold0002 (355-414)||(374335-374394)
scaffold0002 (367-415)||(376381-376429)
[»] scaffold0230 (1 HSPs)
scaffold0230 (355-414)||(431-490)
[»] scaffold0095 (1 HSPs)
scaffold0095 (359-413)||(42759-42813)
[»] scaffold0009 (2 HSPs)
scaffold0009 (241-295)||(202699-202753)
scaffold0009 (355-415)||(202578-202638)
[»] scaffold0765 (1 HSPs)
scaffold0765 (355-411)||(1863-1919)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 214 - 463
Target Start/End: Original strand, 1590757 - 1591007
Alignment:
Q  214 gccacctagatgccatgtatacaaatttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaacttttttn 313  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||     
T  1590757 gccatctagataccatgtatacaaatttgtatagtcagcacttgccacataaacaaaaatgagccaaatcaacaagaaagtggattcagggactttttta 1590856  T
Q  314 nnnnnnnnnnnnttttgcagggatgaaattcnnnnnnnnnn-ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 412  Q
                ||||||||||||||||||            ||| ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  1590857 aaaaacaaaaaattttgcagggatgaaattaaaaaaaaaaaattatcagagaccaaaatctaaactcgttatattttcaaggaccaaaaacatattttag 1590956  T
Q  413 ccttatttttatattaaacacattcaaaacaaataagataaagtaatacac 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1590957 ccttatttttatattaaacacattcaaaacaaataagataaagtaatacac 1591007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 1590551 - 1590687
Alignment:
Q  8 attccatcgtcatataataagtatacttgctaaaatatgcatagaacttcatcatcaaagggtggaagtttaggatgcttgttctctcatgaacaaacat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1590551 attccatcgtcatataataagtatacttgctaaaatatgcatagaatttcatcatcaaagggtggaagtttaggatgcttgttctctcatgaacaaacat 1590650  T
Q  108 gttgctaaagaagacatgattaattgatttcacatag 144  Q
    |||||||||||||||||||||||||||||||||||||    
T  1590651 gttgctaaagaagacatgattaattgatttcacatag 1590687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 522 - 662
Target Start/End: Original strand, 1591064 - 1591200
Alignment:
Q  522 gcatccacctattactcaatctcattcccacactcacccacccaccatatacgtacatatattatatccaattatcgatatatagatcatttcaattatt 621  Q
    |||||||||||||||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1591064 gcatccacctattactcagtctcattcccacac----ccacccaccatatacgtacatatattatatccaattatcgatatatagatcatttcaattatt 1591159  T
Q  622 tttagctgcctcgattattattcctttgcttactcattctc 662  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  1591160 tttagctgcctcaattattattcctttgcttactcattctc 1591200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 25979251 - 25979319
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttta 423  Q
    |||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||||||| |||||    
T  25979251 ttaccagggaccaaaacccaaattcgctatatttgcagggaccaaaaacatattttagccttaatttta 25979319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 1777528 - 1777467
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||||||||||||  ||||||||||||||| || ||||||||||||||||||||||||    
T  1777528 ttaccagggaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttagcctt 1777467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 2412428 - 2412488
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    ||||||||||| |||||| ||||||||||||||| || |||||||||||||||||||||||    
T  2412428 ttaccagggactaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcct 2412488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 25977929 - 25977869
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||    
T  25977929 ttaccagggaccaaaacccaaactcactatatttgcagggaccaaaaacatattttagcct 25977869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 8809656 - 8809588
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaagg-accaaaaacatattttagccttattttt 422  Q
    |||||||||||||||||| ||| ||| ||||||| ||||| |||||||||||||||||||||| |||||    
T  8809656 ttaccagggaccaaaacccaaattcgttatatttgcaagggaccaaaaacatattttagcctttttttt 8809588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 23861811 - 23861751
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||| | |||||| | |||||| || |||||||||||||||||||||||    
T  23861811 ttaccagggaccaaaatccaaactctccatatttgcagggaccaaaaacatattttagcct 23861751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 36837778 - 36837834
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 411  Q
    |||||||||||||||||| ||||||||||||||| ||  ||||||||| ||||||||    
T  36837778 ttaccagggaccaaaacccaaactcgctatatttgcagagaccaaaaatatatttta 36837834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 30844548 - 30844607
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    ||||||| |||| |||||  |||||| ||||||| |||||||||||||||||||||||||    
T  30844548 ttaccagagaccgaaacccgaactcgttatatttgcaaggaccaaaaacatattttagcc 30844607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 25978027 - 25977973
Alignment:
Q  258 ccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 312  Q
    |||| |||||||||||| ||||||||||||||||||||| | |||| ||||||||    
T  25978027 ccacctaagcaaaaatgtgccaaatcagcaagaaagtgggtccagggactttttt 25977973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 420
Target Start/End: Original strand, 19604919 - 19604984
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattt 420  Q
    |||||||||||||||||| |||   || |||||| || |||||||||||||||||||||| |||||    
T  19604919 ttaccagggaccaaaacccaaatgagccatatttacagggaccaaaaacatattttagccatattt 19604984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 30843703 - 30843638
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattt 420  Q
    |||||||||||||||||| ||||||| ||||||| ||  ||  |||| ||||||||||||||||||    
T  30843703 ttaccagggaccaaaacccaaactcgttatatttgcagtgattaaaagcatattttagccttattt 30843638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 4040216 - 4040272
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 411  Q
    |||||||||| ||||||||||| || |||||||| || ||||||||| |||||||||    
T  4040216 ttaccagggagcaaaacctaaattctctatatttgcagggaccaaaatcatatttta 4040272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 1778790 - 1778849
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||| ||||||||||| ||| ||||||||||| || | ||||||| ||||||||||||    
T  1778790 ttaccaaggaccaaaacccaaagtcgctatatttgcaggaaccaaaagcatattttagcc 1778849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 2411321 - 2411262
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    ||||||||||||||||| || |||| |||||||| || |||| |||| ||||||||||||    
T  2411321 ttaccagggaccaaaacttacactctctatatttgcagggactaaaagcatattttagcc 2411262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 11088680 - 11088739
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||||| ||||||||  ||| ||||||||||| || |||| |||||||||||||||||    
T  11088680 ttaccaggaaccaaaactcaaattcgctatatttgcatggacgaaaaacatattttagcc 11088739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 25283272 - 25283331
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||||||| ||||||  ||| ||||||||||| ||  |||||||||||||||||||||    
T  25283272 ttaccagggatcaaaactcaaattcgctatatttgcagtgaccaaaaacatattttagcc 25283331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 11087220 - 11087170
Alignment:
Q  246 agtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtgg 296  Q
    |||||||| |||||||  | ||||||||||| |||||||||||||||||||    
T  11087220 agtcagcatttgccacgcaggcaaaaatgagacaaatcagcaagaaagtgg 11087170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 412
Target Start/End: Original strand, 23863050 - 23863107
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 412  Q
    |||| ||||| ||||||| |||||||| |||||| ||  |||||||||||||||||||    
T  23863050 ttactagggatcaaaacccaaactcgccatatttgcagagaccaaaaacatattttag 23863107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 30215816 - 30215872
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    ||||||| |||||| |||| || ||||||| || ||||||||| |||||||||||||    
T  30215816 cagggactaaaaccaaaacgcgatatatttgcagggaccaaaaccatattttagcct 30215872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 8e-32; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 214 - 416
Target Start/End: Original strand, 22534580 - 22534783
Alignment:
Q  214 gccacctagatgccatgtatacaaatttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaacttttttn 313  Q
    |||||||| |||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || | ||||||||     
T  22534580 gccacctaaatgcaatgtatacaagtttgtacagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtgggtccaaggactttttta 22534679  T
Q  314 nnnnnnnnnnnnttttgcagggatgaaattc-nnnnnnnnnnttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 412  Q
                |||||||||| ||||||||           |||||||||||||||||| ||||||||||||||| || ||| ||||| ||||||||||    
T  22534680 aaaaacaaaaaattttgcagggttgaaattcaaaaaaaaattttaccagggaccaaaacccaaactcgctatatttgcagggatcaaaagcatattttag 22534779  T
Q  413 cctt 416  Q
    ||||    
T  22534780 cctt 22534783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 416
Target Start/End: Complemental strand, 22533483 - 22533315
Alignment:
Q  248 tcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaacttttttnnnnnnnnnnnnnttttgcagggatgaaattc-nn 346  Q
    ||||||| |||||||||||||| |||||| ||||||||||||||||||||| |||| ||||||||             |||||||||||||||||||       
T  22533483 tcagcacctgccacataagcaacaatgagtcaaatcagcaagaaagtggatccagggactttttt-aaaaaacaaaaattttgcagggatgaaattcaaa 22533385  T
Q  347 nnnnnnnnttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
            |||||||||||||||||| ||||||||||||| | || ||||||||| ||||||||||||||    
T  22533384 aattttttttaccagggaccaaaacccaaactcgctatatatacagggaccaaaagcatattttagcctt 22533315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 10717180 - 10717120
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||||||    
T  10717180 ttaccagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcct 10717120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 10718448 - 10718508
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||||||    
T  10718448 ttaccagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcct 10718508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 28997993 - 28998052
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||    
T  28997993 ttactagggaccaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcc 28998052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 36588281 - 36588220
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||||||||||||  ||||||||||||||| || ||||||||| ||||||||||||||    
T  36588281 ttaccagggaccaaaacgcaaactcgctatatttgcagggaccaaaagcatattttagcctt 36588220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 38456730 - 38456790
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||||||| | ||||||||| || ||||||||| |||||||||||||    
T  38456730 ttaccagggaccaaaacctaaatttgctatatttgcagggaccaaaagcatattttagcct 38456790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 28996893 - 28996826
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttt 422  Q
    |||||||||||||||||| |||||| |||||||| || ||||||||| ||||||||||| || |||||    
T  28996893 ttaccagggaccaaaacccaaactcactatatttgcagggaccaaaatcatattttagcatttttttt 28996826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 413
Target Start/End: Complemental strand, 4182681 - 4182623
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 413  Q
    |||||||||||||||||| ||| ||||||||||| || ||||||||| |||||||||||    
T  4182681 ttaccagggaccaaaacccaaattcgctatatttacagggaccaaaagcatattttagc 4182623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 417
Target Start/End: Original strand, 22272270 - 22272332
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 417  Q
    |||||||||||||||||| ||| ||||||||||| |  ||||||||| |||||||||||||||    
T  22272270 ttaccagggaccaaaacccaaattcgctatatttgcggggaccaaaagcatattttagcctta 22272332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 45517962 - 45518020
Alignment:
Q  357 accagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||| |||||||||||| || || ||||||||| |||||||||||||    
T  45517962 accagggaccaaaacccaaactcgctatacttgcagggaccaaaagcatattttagcct 45518020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 3483688 - 3483635
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 412  Q
    |||||||||||||  ||||||||||||||| || ||||||||||||||||||||    
T  3483688 cagggaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttag 3483635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 14197884 - 14197823
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||| ||||||||||| | |||||||| |||||| || ||||||||||||||||||||||||    
T  14197884 ttactagggaccaaaatccaaactcgccatatttgcagggaccaaaaacatattttagcctt 14197823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 36589387 - 36589448
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||| ||||||||||||||||||||||||||| || | || |||| ||||||||||||||    
T  36589387 ttaccaaggaccaaaacctaaactcgctatatttgcaggaactaaaatcatattttagcctt 36589448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 38658540 - 38658480
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| ||| ||||||||||| || |||||| || |||||||||||||    
T  38658540 ttaccagggaccaaaacccaaattcgctatatttgcatggaccagaagcatattttagcct 38658480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 359 - 414
Target Start/End: Original strand, 1420446 - 1420501
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||||||| | | ||||||||||||||| || ||||||||||||||||||||||    
T  1420446 cagggaccaatatccaaactcgctatatttgcagggaccaaaaacatattttagcc 1420501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 3031543 - 3031602
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    ||||||||||||||||||||||   || |||||| || ||||||||||||||||||||||    
T  3031543 ttaccagggaccaaaacctaaatgagccatatttacagggaccaaaaacatattttagcc 3031602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 22534435 - 22534482
Alignment:
Q  97 tgaacaaacatgttgctaaagaagacatgattaattgatttcacatag 144  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  22534435 tgaacaaacatattggtaaagaagagatgattaattgatttcacatag 22534482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 418
Target Start/End: Complemental strand, 41354530 - 41354467
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttat 418  Q
    |||||||| |||||||   |||||||||||||||  ||||||||||||||||||||||| ||||    
T  41354530 ttaccaggaaccaaaattcaaactcgctatatttataaggaccaaaaacatattttagctttat 41354467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 430
Target Start/End: Complemental strand, 45516456 - 45516382
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttatattaaa 430  Q
    ||||||| |||||||||| ||| ||||||||||| || |||| ||||||||||||||| ||| ||| |||||||||    
T  45516456 ttaccagagaccaaaacccaaattcgctatatttacatggactaaaaacatattttagtctt-tttatatattaaa 45516382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 39440426 - 39440480
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 413  Q
    |||||||||||||  |||||||| |||||| |||||||||||| |||||||||||    
T  39440426 cagggaccaaaactcaaactcgccatatttgcaaggaccaaaagcatattttagc 39440480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 38455506 - 38455449
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 412  Q
    |||| ||||||||||||  ||| || |||||||| |||||||||||||||||||||||    
T  38455506 ttactagggaccaaaactcaaattcactatatttgcaaggaccaaaaacatattttag 38455449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 30124223 - 30124283
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||  ||||| ||| ||||| || ||||||||| |||||||||||||    
T  30124223 ttaccagggaccaaaactcaaacttgctttatttgcagggaccaaaagcatattttagcct 30124283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 4183979 - 4184038
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||||||||||||||| |||| | |||||||| || |||| |||| ||||||||||||    
T  4183979 ttaccagggaccaaaacccaaacgcactatatttgcagggactaaaagcatattttagcc 4184038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 4183881 - 4183935
Alignment:
Q  258 ccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 312  Q
    |||| |||||||||||| ||||||| ||||||||||||| | |||| ||||||||    
T  4183881 ccacctaagcaaaaatgtgccaaattagcaagaaagtgggtccagggactttttt 4183935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 30123199 - 30123150
Alignment:
Q  367 aaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||| ||| |||||||||||  | ||||||||||||||||||||||||    
T  30123199 aaaacccaaattcgctatatttgtatggaccaaaaacatattttagcctt 30123150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 423
Target Start/End: Original strand, 34213520 - 34213553
Alignment:
Q  390 caaggaccaaaaacatattttagccttattttta 423  Q
    |||||||||||| |||||||||||||||||||||    
T  34213520 caaggaccaaaaccatattttagccttattttta 34213553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 39439983 - 39439922
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    ||||||||| |||||||  ||||| || |||||| || ||||||||| ||||||||||||||    
T  39439983 ttaccagggtccaaaactcaaactagccatatttgcagggaccaaaatcatattttagcctt 39439922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 41357366 - 41357427
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||  ||||||||| |||||| | |||||| | |||||||||||||||||||| ||||    
T  41357366 ttaccagaaaccaaaacccaaactcaccatatttgcgaggaccaaaaacatattttaacctt 41357427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 1376994 - 1376934
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||| | ||| | ||||||||| || ||||||||| ||||||| |||||    
T  1376994 ttaccagggaccaaaatccaaattggctatatttgcagggaccaaaatcatatttaagcct 1376934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 1385555 - 1385615
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||| | ||| | ||||||||| || ||||||||| ||||||| |||||    
T  1385555 ttaccagggaccaaaatccaaattggctatatttgcagggaccaaaaccatatttaagcct 1385615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 22271002 - 22270942
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    ||||||||||| |||| | ||| ||||||||||| || ||| ||||| |||||||||||||    
T  22271002 ttaccagggactaaaatccaaattcgctatatttgcagggatcaaaagcatattttagcct 22270942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 8e-29; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 219 - 312
Target Start/End: Original strand, 20585387 - 20585480
Alignment:
Q  219 ctagatgccatgtatacaaatttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 312  Q
    ||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| || |||||    
T  20585387 ctagatgccatgtatacaagtttgtacagtcagcacatgccacataagcaaaaatgagtcaaatcagcaagaaagtgggttcagggaccttttt 20585480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 52401076 - 52401008
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttta 423  Q
    |||||||||||||||||| |||||||| |||||| || ||||||||||||||||||||||||| |||||    
T  52401076 ttaccagggaccaaaacccaaactcgccatatttgcagggaccaaaaacatattttagccttaatttta 52401008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 355 - 417
Target Start/End: Complemental strand, 32635653 - 32635591
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 417  Q
    |||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||||||||||||    
T  32635653 ttaccagggaccaaaacccaaactcgctatatttacaaggacaaaaaatatattttagcctta 32635591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 355 - 417
Target Start/End: Complemental strand, 53121361 - 53121299
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 417  Q
    ||||||||||| |||||| ||||||||||||||| || |||||||||||||||||||||||||    
T  53121361 ttaccagggactaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcctta 53121299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 39820604 - 39820664
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||||||    
T  39820604 ttaccagggaccaaaacccaaactcgctatatttgcagggaccaaaaccatattttagcct 39820664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 20585206 - 20585279
Alignment:
Q  70 tggaagtttaggatgcttgttct--ctcatgaacaaacatgttgctaaagaagacatgattaattgatttcaca 141  Q
    |||||| ||||||||||||||||  || |||||||||||||||  |||||| ||||||||||||||||||||||    
T  20585206 tggaagattaggatgcttgttcttgctgatgaacaaacatgttcgtaaagatgacatgattaattgatttcaca 20585279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 45267364 - 45267296
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttta 423  Q
    |||||||||||||||||  ||||||||||||||| || ||| ||||||||||||||||| || ||||||    
T  45267364 ttaccagggaccaaaactcaaactcgctatatttgcagggatcaaaaacatattttagcttttttttta 45267296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 46026135 - 46026075
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||| ||||||||||| | ||||||||||||||| || |||||||||||||||||||||||    
T  46026135 ttactagggaccaaaatccaaactcgctatatttgcagggaccaaaaacatattttagcct 46026075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 52403124 - 52403184
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| |||||||| |||||| || ||||||||| |||||||||||||    
T  52403124 ttaccagggaccaaaacccaaactcgccatatttgcagggaccaaaagcatattttagcct 52403184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 4705740 - 4705681
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    ||||||||||||||||||||||||||| |||||| || ||| ||||| ||||||||||||    
T  4705740 ttaccagggaccaaaacctaaactcgccatatttgcagggatcaaaagcatattttagcc 4705681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 35639559 - 35639504
Alignment:
Q  362 ggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 417  Q
    ||||||||||  ||||| |||||||||||||||||||||| |||||||||||||||    
T  35639559 ggaccaaaactcaaacttgctatattttcaaggaccaaaagcatattttagcctta 35639504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 48033117 - 48033058
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||||||||||||| | |||||| | |||||| |||||||||||||||||||||||||    
T  48033117 ttaccagggaccaaaatccaaactcaccatatttgcaaggaccaaaaacatattttagcc 48033058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 52708617 - 52708676
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    ||||||| |||||||||| ||||||||||||||| || ||||||||| ||||||||||||    
T  52708617 ttaccagagaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcc 52708676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 413
Target Start/End: Original strand, 20489358 - 20489416
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 413  Q
    |||||||||||||||||| |||||||  |||||| || |||||||||||||||||||||    
T  20489358 ttaccagggaccaaaacccaaactcgtcatatttgcagggaccaaaaacatattttagc 20489416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 40477374 - 40477435
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||| ||||||||||||| ||||||| ||||||| || ||||||||| ||||||||||||||    
T  40477374 ttactagggaccaaaacccaaactcgttatatttgcagggaccaaaatcatattttagcctt 40477435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 46027417 - 46027486
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttat 424  Q
    ||||||||||||||||   ||||||||||||||| || |||||||||  ||||||||||||| |||||||    
T  46027417 ttaccagggaccaaaattcaaactcgctatatttgcagggaccaaaagtatattttagccttctttttat 46027486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 20585648 - 20585704
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||| | ||||||||||||||| || ||| |||||||||||||||||||    
T  20585648 cagggaccaaaatccaaactcgctatatttgcagggatcaaaaacatattttagcct 20585704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 45268570 - 45268630
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| ||||| ||||||||| || |||  ||||||||||||||||||    
T  45268570 ttaccagggaccaaaacccaaacttgctatatttgcagggattaaaaacatattttagcct 45268630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 47433809 - 47433869
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||  ||| ||||||||||| || ||||||||| |||||||||||||    
T  47433809 ttaccagggaccaaaactcaaattcgctatatttgcagggaccaaaaccatattttagcct 47433869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 52707591 - 52707539
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 411  Q
    |||||||||||||  ||| ||||||||||| ||||||||||||||||||||||    
T  52707591 cagggaccaaaactcaaattcgctatatttgcaaggaccaaaaacatatttta 52707539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 54437467 - 54437527
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||| ||||||||||||  ||| ||||||||||| || |||||||||||||||||||||||    
T  54437467 ttactagggaccaaaactcaaattcgctatatttgcagggaccaaaaacatattttagcct 54437527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 32637188 - 32637255
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttt 422  Q
    |||||||| ||||||||| |||||||||| |||| || ||||||||| ||||||||||| || |||||    
T  32637188 ttaccaggaaccaaaacccaaactcgctacatttacagggaccaaaagcatattttagcatttttttt 32637255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 41780808 - 41780875
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttt 422  Q
    |||| ||||||| ||||| ||||| |||||||||| | ||| |||||||||||||||||||| |||||    
T  41780808 ttactagggaccgaaacccaaacttgctatatttttagggatcaaaaacatattttagcctttttttt 41780875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 46104402 - 46104343
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    ||||||||||| |||||  ||||||||||||||| || ||||||||| ||||||||||||    
T  46104402 ttaccagggacaaaaactcaaactcgctatatttgcagggaccaaaatcatattttagcc 46104343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 417
Target Start/End: Complemental strand, 3416554 - 3416492
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 417  Q
    |||||||||||||||| | ||||| ||||||||| || ||| ||||| |||||||||||||||    
T  3416554 ttaccagggaccaaaaaccaaacttgctatatttacagggatcaaaatcatattttagcctta 3416492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 413
Target Start/End: Complemental strand, 40476272 - 40476222
Alignment:
Q  363 gaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 413  Q
    |||||||| | ||||||||||||||| || |||||||||||||||||||||    
T  40476272 gaccaaaatccaaactcgctatatttgcagggaccaaaaacatattttagc 40476222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 417
Target Start/End: Original strand, 53122471 - 53122533
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 417  Q
    ||||||||||||||||| || |||| |||||||| || |||| |||| |||||||||||||||    
T  53122471 ttaccagggaccaaaacttacactctctatatttgcagggactaaaagcatattttagcctta 53122533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 20488425 - 20488368
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 412  Q
    |||||||||||||||||| ||| || | |||||| || ||||||||||||||||||||    
T  20488425 ttaccagggaccaaaacccaaattcaccatatttgcagggaccaaaaacatattttag 20488368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 43734041 - 43734102
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    ||||||| |||||||||| ||||| ||||||||| |||| ||||||  ||||||||||||||    
T  43734041 ttaccagagaccaaaacccaaacttgctatatttgcaagaaccaaacgcatattttagcctt 43734102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 976839 - 976779
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    ||||||||||| ||||| |||| ||||||||||| || ||| ||||| |||||||||||||    
T  976839 ttaccagggactaaaacttaaattcgctatatttgcagggatcaaaagcatattttagcct 976779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 9855237 - 9855169
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc-ttattttt 422  Q
    |||| ||||||||||| | ||||||||||||||| || ||| ||||| |||||||||||| ||||||||    
T  9855237 ttactagggaccaaaatccaaactcgctatatttacagggatcaaaatcatattttagccattattttt 9855169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 22508794 - 22508738
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 411  Q
    |||||| ||||||||||  ||||||||||||||| || ||||||||| |||||||||    
T  22508794 ttaccaaggaccaaaactcaaactcgctatatttgcagggaccaaaatcatatttta 22508738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 42446577 - 42446525
Alignment:
Q  363 gaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||| |||||||| |||||| || ||||||||| |||||||||||||    
T  42446577 gaccaaaacccaaactcgccatatttgcagggaccaaaagcatattttagcct 42446525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 43641202 - 43641143
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    ||||||||||||| || | ||||||||||||||| || |||| |||| ||||||||||||    
T  43641202 ttaccagggaccataatccaaactcgctatatttgcagggactaaaagcatattttagcc 43641143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 416
Target Start/End: Original strand, 44507818 - 44507860
Alignment:
Q  374 aaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    ||||||||||||||| || ||||||||| ||||||||||||||    
T  44507818 aaactcgctatatttgcagggaccaaaatcatattttagcctt 44507860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 389
Target Start/End: Original strand, 46106764 - 46106798
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatatttt 389  Q
    |||||||||||||||||| ||||||||||||||||    
T  46106764 ttaccagggaccaaaacccaaactcgctatatttt 46106798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 413
Target Start/End: Original strand, 48035732 - 48035790
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 413  Q
    |||||||||||||||| | |||||||  |||||| || ||| |||||||||||||||||    
T  48035732 ttaccagggaccaaaatccaaactcgtcatatttgcagggatcaaaaacatattttagc 48035790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 39819371 - 39819314
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 412  Q
    ||||||||||||||||   ||||||||||||||| || |||| |||| ||||||||||    
T  39819371 ttaccagggaccaaaattcaaactcgctatatttgcagggactaaaaccatattttag 39819314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 376 - 416
Target Start/End: Original strand, 3417813 - 3417853
Alignment:
Q  376 actcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||| |||||| || ||||||||||||||||||||||||    
T  3417813 actcgccatatttacagggaccaaaaacatattttagcctt 3417853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 50562980 - 50562924
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 411  Q
    |||||| | |||||||||||||||  ||||||||  | |||||||||||||||||||    
T  50562980 ttaccaagaaccaaaacctaaacttactatatttgtagggaccaaaaacatatttta 50562924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 50563076 - 50563040
Alignment:
Q  260 acataagcaaaaatgagccaaatcagcaagaaagtgg 296  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  50563076 acataagcaaaaatgtgccaaatcaacaagaaagtgg 50563040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 50563811 - 50563867
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 411  Q
    ||||||| |||||||| | ||||||| ||||||||||  ||| ||||||||||||||    
T  50563811 ttaccagcgaccaaaatccaaactcgttatattttcagagactaaaaacatatttta 50563867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 214 - 296
Target Start/End: Original strand, 55542438 - 55542520
Alignment:
Q  214 gccacctagatgccatgtatacaaatttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtgg 296  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| ||| ||||||||||||| ||||||| |||||||||||    
T  55542438 gccacctagatgccatgtatacaagtttgtacggtcagcacttgcaacaaaagcaaaaatgagtcaaatcaacaagaaagtgg 55542520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 3879291 - 3879210
Alignment:
Q  214 gccacctagatgccatgtatacaaatttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtg 295  Q
    |||||||| |||| |||||||||| ||| || || ||||||||| |||||||||||||||||||||||||||||||||||||    
T  3879291 gccacctaaatgcaatgtatacaattttatacagccagcacttggcacataagcaaaaatgagccaaatcagcaagaaagtg 3879210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 416
Target Start/End: Original strand, 3880389 - 3880557
Alignment:
Q  248 tcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaacttttttnnnnnnnnnnnnnttttgcagggatgaaattcnnn 347  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||| ||| | |||| ||||||||             |||||||||||| ||||||       
T  3880389 tcagcacctgccacataagcaacaatgagccaaatcagtaagaaaatgggtccagggacttttttaaaaaacaaaattttttgcagggataaaattcaat 3880488  T
Q  348 nnnnnnnttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
           |||| ||||||||||||| ||||||||||||||| || | ||||||||||||||||||||||    
T  3880489 tttttttttactagggaccaaaacccaaactcgctatatttgcaggaaccaaaaacatattttagcctt 3880557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 355 - 420
Target Start/End: Original strand, 33137228 - 33137293
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattt 420  Q
    ||||||||||| |||||| ||||||||||||||| || ||| ||||||||||||||||||||||||    
T  33137228 ttaccagggactaaaacccaaactcgctatatttgcagggatcaaaaacatattttagccttattt 33137293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 19674473 - 19674413
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||  ||||||||||||||| |||||||||||| |||||||||||||    
T  19674473 ttaccagggaccaaaactcaaactcgctatatttgcaaggaccaaaagcatattttagcct 19674413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 45619731 - 45619791
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||    
T  45619731 ttaccagggaacaaaacctaaactcgctatatttgcagggactaaaaacatattttagcct 45619791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 22204114 - 22204055
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    ||||||||||| |||||| ||||||||||||||| || ||||||||||||||||||||||    
T  22204114 ttaccagggactaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcc 22204055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 360 - 419
Target Start/End: Original strand, 32699319 - 32699378
Alignment:
Q  360 agggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatt 419  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||||||| ||||    
T  32699319 agggaccaaaacccaaactcgctatatttacagggaccaaaaacatattttagccatatt 32699378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 41934013 - 41933938
Alignment:
Q  220 tagatgccatgtatacaaatttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtg 295  Q
    ||||||||| |||||||| |||| |  |||| ||| |||||||||||||||||||||||| |||||||||||||||    
T  41934013 tagatgccacgtatacaagtttgaacggtcaacacctgccacataagcaaaaatgagccacatcagcaagaaagtg 41933938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 42359346 - 42359405
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||||||||||||| | ||||||||||||||| || ||||||||||||||||||||||    
T  42359346 ttaccagggaccaaaatccaaactcgctatatttgcagggaccaaaaacatattttagcc 42359405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 3879483 - 3879389
Alignment:
Q  47 catagaacttcatcatcaaagggtggaagtttaggatgcttgttct--ctcatgaacaaacatgttgctaaagaagacatgattaattgatttcacatag 144  Q
    |||||||||| |||||||||| ||||||| ||     |||||||||  || |||||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  3879483 catagaacttgatcatcaaagagtggaagatt-----gcttgttcttgctgatgaacaaacatattggtaaagaagagatgattaattgatttcacatag 3879389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 45618344 - 45618284
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||| ||||| |||||||    
T  45618344 ttaccagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatatattagcct 45618284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 34659761 - 34659704
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    ||||||||||||||| ||||||| |||||| || ||||||||| ||||||||||||||    
T  34659761 cagggaccaaaaccttaactcgccatatttgcagggaccaaaagcatattttagcctt 34659704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 3879145 - 3879085
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||| | ||||||||||||||| || ||| ||||| |||||||||||||    
T  3879145 ttaccagggaccaaaatccaaactcgctatatttgcagggatcaaaagcatattttagcct 3879085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 42358091 - 42358023
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttta 423  Q
    |||||||||| ||||||  |||||  |||||||| || |||||||||||||||||||||||| ||||||    
T  42358091 ttaccagggatcaaaactcaaacttcctatatttgcagggaccaaaaacatattttagcctttttttta 42358023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 55541710 - 55541802
Alignment:
Q  47 catagaacttcatcatcaaagggtggaagtttaggatgcttgttctc--tcatgaacaaacatgttgctaaagaagacatgattaattgatttc 138  Q
    |||||||||| |||| |||||| || ||| ||||||||||||||||   | || ||||||||||||| ||||||| |||||||| |||||||||    
T  55541710 catagaacttgatcaacaaagg-tgaaagattaggatgcttgttcttgttgatcaacaaacatgttggtaaagaaaacatgatttattgatttc 55541802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 41933870 - 41933817
Alignment:
Q  362 ggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    ||||||||||| ||||||||||||||| ||  |||||||| |||||||||||||    
T  41933870 ggaccaaaacccaaactcgctatatttgcagagaccaaaatcatattttagcct 41933817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 16574368 - 16574424
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 411  Q
    |||| |||||||||||| |||| ||||||||||| || |||| ||||||||||||||    
T  16574368 ttacaagggaccaaaacttaaattcgctatatttgcagggactaaaaacatatttta 16574424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 17371728 - 17371800
Alignment:
Q  240 ttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 312  Q
    ||||| |||||||| ||||||| ||| | |||||| | ||||||||||||||||||||| || | ||||||||    
T  17371728 ttgtacagtcagcaattgccacgtaaactaaaatgtgtcaaatcagcaagaaagtggatccaaggactttttt 17371800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 421
Target Start/End: Complemental strand, 40198633 - 40198570
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttt 421  Q
    |||||||||||||||||| ||||||||||||||| || ||   |||| |||||||||||||| ||||    
T  40198633 ttaccagggaccaaaacccaaactcgctatatttgcaggg---aaaagcatattttagccttttttt 40198570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 41935078 - 41935126
Alignment:
Q  363 gaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 411  Q
    |||||||||| ||||||| ||||||| || |||||||||||||||||||    
T  41935078 gaccaaaacccaaactcgttatatttgcagggaccaaaaacatatttta 41935126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 54121700 - 54121760
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| ||||||||  ||||| || ||| ||||| |||||||||||||    
T  54121700 ttaccagggaccaaaacccaaactcgccgtatttgcagggagcaaaatcatattttagcct 54121760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 414
Target Start/End: Original strand, 19675624 - 19675679
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||||||||| | ||||||| ||||||| || ||||||||| ||||||||||||    
T  19675624 cagggaccaaaatccaaactcgttatatttgcagggaccaaaagcatattttagcc 19675679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 22205222 - 22205281
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    ||||||||||||||||| || |||| |||||||| || |||| |||| ||||||||||||    
T  22205222 ttaccagggaccaaaacttacactctctatatttgcagggactaaaagcatattttagcc 22205281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 418
Target Start/End: Complemental strand, 47359573 - 47359510
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttat 418  Q
    ||||||||||| |||||  ||| ||||||||||| |||| || ||||||||||||||| |||||    
T  47359573 ttaccagggactaaaactcaaattcgctatatttgcaagaacgaaaaacatattttagtcttat 47359510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 29060771 - 29060821
Alignment:
Q  246 agtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtgg 296  Q
    |||||||| ||||||| || |||||||||||  ||||||||||||||||||    
T  29060771 agtcagcatttgccacgtaggcaaaaatgagataaatcagcaagaaagtgg 29060821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Original strand, 5259171 - 5259212
Alignment:
Q  375 aactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    ||||||| |||||| || ||||||||||||||||||||||||    
T  5259171 aactcgccatatttgcagggaccaaaaacatattttagcctt 5259212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 17281630 - 17281569
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||||||||||| | ||| ||||||||||| || |||| |||| || |||||||||||    
T  17281630 ttaccagggaccaaaatccaaattcgctatatttgcagggactaaaagcacattttagcctt 17281569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 17370132 - 17370071
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||||||||||| | ||| ||||||||||| || |||| |||| || |||||||||||    
T  17370132 ttaccagggaccaaaatccaaattcgctatatttgcagggactaaaagcacattttagcctt 17370071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 29060882 - 29060943
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||| |||||||||   ||||||||||||||| || |||  |||||||||||||||||||    
T  29060882 ttaccaaggaccaaaattcaaactcgctatatttgcagggattaaaaacatattttagcctt 29060943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 55542579 - 55542640
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    ||||||||||||||| || ||||  ||||||||| || ||| |||||||| |||||||||||    
T  55542579 ttaccagggaccaaatcccaaacatgctatatttgcagggatcaaaaacagattttagcctt 55542640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 17371845 - 17371901
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 411  Q
    |||||||||||||||||| ||| ||| ||||||| || ||| ||||| |||||||||    
T  17371845 ttaccagggaccaaaacccaaattcgttatatttgcagggatcaaaagcatatttta 17371901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 30091055 - 30091115
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||| ||| |||||| ||||||||  |||||| || ||||||||| |||||||||||||    
T  30091055 ttaccatggatcaaaacttaaactcgtcatatttgcatggaccaaaaccatattttagcct 30091115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 55541088 - 55541048
Alignment:
Q  256 tgccacataagcaaaaatgagccaaatcagcaagaaagtgg 296  Q
    |||| ||||||||||||||| |||||||||||| |||||||    
T  55541088 tgccgcataagcaaaaatgaaccaaatcagcaacaaagtgg 55541048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 10127 - 10046
Alignment:
Q  214 gccacctagatgccatgtatacaaatttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtg 295  Q
    |||||||| |||| |||||||||| ||| || || ||||||||| |||||||||||||||||||||||||||||||||||||    
T  10127 gccacctaaatgcaatgtatacaattttatacagccagcacttggcacataagcaaaaatgagccaaatcagcaagaaagtg 10046  T

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Target: scaffold0562; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 10319 - 10225
Alignment:
Q  47 catagaacttcatcatcaaagggtggaagtttaggatgcttgttct--ctcatgaacaaacatgttgctaaagaagacatgattaattgatttcacatag 144  Q
    |||||||||| |||||||||| ||||||| ||     |||||||||  || |||||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  10319 catagaacttgatcatcaaagagtggaagatt-----gcttgttcttgctgatgaacaaacatattggtaaagaagagatgattaattgatttcacatag 10225  T

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Target: scaffold0562; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 9981 - 9921
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||| | ||||||||||||||| || ||| ||||| |||||||||||||    
T  9981 ttaccagggaccaaaatccaaactcgctatatttgcagggatcaaaagcatattttagcct 9921  T

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Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 27262967 - 27262897
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttata 425  Q
    |||||||||||||||||  ||||||||||||||| || |||||||||||||||||||||||||||| ||||    
T  27262967 ttaccagggaccaaaacacaaactcgctatatttgcagggaccaaaaacatattttagccttatttatata 27262897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 9774888 - 9774949
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||| ||||||||||||||    
T  9774888 ttaccagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcctt 9774949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 23469969 - 23470038
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttat 424  Q
    |||||||||| ||||||| ||||||||||||||| || |||||||||||||||||||||| | |||||||    
T  23469969 ttaccagggatcaaaaccgaaactcgctatatttgcagggaccaaaaacatattttagccatttttttat 23470038  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 27264216 - 27264276
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||||||    
T  27264216 ttaccagggaccaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcct 27264276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 37395692 - 37395628
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatt 419  Q
    |||||||||||||||||| |||  |||||||||| || |||||||||||||||||||||||||||    
T  37395692 ttaccagggaccaaaacccaaatacgctatatttgcagggaccaaaaacatattttagccttatt 37395628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 46075050 - 46075109
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||||||||||||||| ||||||||||||||| || ||| ||||||||||||||||||    
T  46075050 ttaccagggaccaaaacccaaactcgctatatttgcagggatcaaaaacatattttagcc 46075109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 47038925 - 47038864
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||||||||||||| ||||| ||||||||| || |||| |||||||||||||||||||    
T  47038925 ttaccagggaccaaaacccaaactagctatatttgcagggactaaaaacatattttagcctt 47038864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 35721160 - 35721100
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| ||| ||| ||||||| || |||||||||||||||||||||||    
T  35721160 ttaccagggaccaaaacccaaattcgttatatttgcagggaccaaaaacatattttagcct 35721100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 24609978 - 24609919
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||| ||||||||||||| |||||||| |||||| || ||||||||||||||||||||||    
T  24609978 ttactagggaccaaaacccaaactcgccatatttgcagggaccaaaaacatattttagcc 24609919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 417
Target Start/End: Original strand, 24611117 - 24611179
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 417  Q
    |||||||||||||||||  |||||||  |||||| || |||||||||||||||||||||||||    
T  24611117 ttaccagggaccaaaactcaaactcgtcatatttacagggaccaaaaacatattttagcctta 24611179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 417
Target Start/End: Complemental strand, 26863919 - 26863857
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 417  Q
    |||||||||||||||||  ||| ||||||||||| || |||||||||||| ||||||||||||    
T  26863919 ttaccagggaccaaaactcaaattcgctatatttgcagggaccaaaaacacattttagcctta 26863857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 11710612 - 11710551
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||||||||||||| || |||| ||||||| || ||| ||||||||||||||||||||    
T  11710612 ttaccagggaccaaaacccaacctcgttatatttacagggatcaaaaacatattttagcctt 11710551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 20723688 - 20723749
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    ||||||||||| |||||  ||| ||||||||||| || ||||||||||||||||||||||||    
T  20723688 ttaccagggactaaaactcaaattcgctatatttgcagggaccaaaaacatattttagcctt 20723749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 48588965 - 48589022
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||||||||| |||||| | |||||| || ||||||||||||||||||||||||    
T  48588965 cagggaccaaaacccaaactcaccatatttacagggaccaaaaacatattttagcctt 48589022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 48594052 - 48594109
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||| ||||||| |||||||| |||||| || ||||||||||||||||||||||||    
T  48594052 cagggatcaaaacccaaactcgccatatttacagggaccaaaaacatattttagcctt 48594109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 48598663 - 48598720
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||| ||||||| |||||||| |||||| || ||||||||||||||||||||||||    
T  48598663 cagggatcaaaacccaaactcgccatatttacagggaccaaaaacatattttagcctt 48598720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 9774096 - 9774040
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 411  Q
    |||||||||||||||||  ||||||| ||||||| || |||||||||||||||||||    
T  9774096 ttaccagggaccaaaactcaaactcgttatatttgcagggaccaaaaacatatttta 9774040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 17977559 - 17977623
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatt 419  Q
    |||||| ||||||||||| ||| ||||||||||| || ||||||||| ||||||| |||||||||    
T  17977559 ttaccaaggaccaaaacccaaattcgctatatttgcagggaccaaaaccatatttaagccttatt 17977623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 35722285 - 35722345
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    ||||||| |||||||| | ||| ||||||||||| || |||||||||||||||||||||||    
T  35722285 ttaccagagaccaaaatccaaattcgctatatttacagggaccaaaaacatattttagcct 35722345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 39163024 - 39163084
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| || ||||| |||||| || ||||||||| |||||||||||||    
T  39163024 ttaccagggaccaaaacccaacctcgccatatttgcagggaccaaaagcatattttagcct 39163084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 11711254 - 11711312
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    ||||||||||||||| || ||| ||||||||||| || ||||||||||||||||||||||    
T  11711254 ttaccagggaccaaaccc-aaattcgctatatttgcagggaccaaaaacatattttagcc 11711312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 20722531 - 20722472
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||||||||||||||| ||| ||||||||||| || ||||||||| || |||||||||    
T  20722531 ttaccagggaccaaaacccaaattcgctatatttgcagggaccaaaagcacattttagcc 20722472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 24427369 - 24427428
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    ||||||||||| |||||  |||||||||||||||  | ||||||||||||||||||||||    
T  24427369 ttaccagggactaaaactcaaactcgctatatttgtagggaccaaaaacatattttagcc 24427428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 35911888 - 35911951
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttat 418  Q
    |||||| ||||||||| | ||| ||||||||||| || ||||||||| ||||||||||||||||    
T  35911888 ttaccaaggaccaaaatccaaattcgctatatttgcagggaccaaaagcatattttagccttat 35911951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 30722285 - 30722235
Alignment:
Q  246 agtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtgg 296  Q
    |||||||| ||||||| || ||||||||||| |||||||||||||||||||    
T  30722285 agtcagcatttgccacgtaggcaaaaatgagacaaatcagcaagaaagtgg 30722235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 34934747 - 34934807
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||| ||||||||||| ||| ||||||||||| || |||| |||| |||||||||||||    
T  34934747 ttaccaaggaccaaaacccaaattcgctatatttgcagggacaaaaagcatattttagcct 34934807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 50164461 - 50164401
Alignment:
Q  356 taccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    ||||| ||||||||||  |||||||| |||||| || ||||||||| ||||||||||||||    
T  50164461 taccaaggaccaaaactcaaactcgccatatttgcagggaccaaaagcatattttagcctt 50164401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 17976820 - 17976761
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||||||||||||||| ||| ||||||||||| || | ||||||| ||||||| ||||    
T  17976820 ttaccagggaccaaaacccaaattcgctatatttgcaggaaccaaaaccatatttaagcc 17976761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 37396840 - 37396899
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||| ||||||||||  ||| ||||||||||| || ||||||||| ||||||||||||    
T  37396840 ttaccaaggaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagcc 37396899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 417
Target Start/End: Original strand, 13074574 - 13074636
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 417  Q
    |||||||||||||||||  |||||||  |||||| || | |||||||| ||||||||||||||    
T  13074574 ttaccagggaccaaaactcaaactcgtcatatttgcaggaaccaaaaatatattttagcctta 13074636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 296
Target Start/End: Complemental strand, 24422716 - 24422634
Alignment:
Q  214 gccacctagatgccatgtatacaaatttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtgg 296  Q
    ||||||| |||||||  | ||||  |||| ||||||||||  ||||||||| ||| ||||||| ||||| |||||||||||||    
T  24422716 gccacctggatgccacatgtacatgtttgcatagtcagcatatgccacataggcagaaatgagacaaattagcaagaaagtgg 24422634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 417
Target Start/End: Complemental strand, 27815500 - 27815438
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 417  Q
    |||||||||||||||||| ||| | ||||||||| || |||||| || ||||||| |||||||    
T  27815500 ttaccagggaccaaaacccaaattggctatatttgcagggaccagaaccatatttaagcctta 27815438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 409
Target Start/End: Original strand, 27816720 - 27816774
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattt 409  Q
    |||||||||||||||||| ||| | ||||||||| || ||||||||| |||||||    
T  27816720 ttaccagggaccaaaacccaaattggctatatttgcagggaccaaaaccatattt 27816774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 45979506 - 45979556
Alignment:
Q  365 ccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||  ||| ||||||||||| || |||||||||||||||||||||||    
T  45979506 ccaaaactcaaattcgctatatttgcagggaccaaaaacatattttagcct 45979556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 417
Target Start/End: Original strand, 48857197 - 48857247
Alignment:
Q  367 aaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 417  Q
    |||| ||||| ||| ||||||| |||||||||||||||||||||| |||||    
T  48857197 aaaatctaaattcgttatatttgcaaggaccaaaaacatattttaacctta 48857247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 39162977 - 39162928
Alignment:
Q  263 taagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 312  Q
    ||||||||||  |||||||||||||||||||||||  |||| ||||||||    
T  39162977 taagcaaaaactagccaaatcagcaagaaagtggacccagggactttttt 39162928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 35910711 - 35910652
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| |||   ||||||||| || ||||||||| |||||||||||||    
T  35910711 ttaccagggaccaaaaccgaaatatgctatatttgca-ggaccaaaatcatattttagcct 35910652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 46073944 - 46073884
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    ||||||||||| |||||| ||| | ||||||||| || ||| ||||| |||||||||||||    
T  46073944 ttaccagggactaaaacccaaatttgctatatttgcagggatcaaaagcatattttagcct 46073884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 3936637 - 3936576
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||    
T  3936637 ttaccagggaccaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcctt 3936576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 6894010 - 6894069
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    ||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||    
T  6894010 ttaccagggaccaaaacctaaactcgtcatatttgcaaggaccaaaaacatattttagcc 6894069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 3954111 - 3954051
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||||||||    
T  3954111 ttaccagggaccaaaacccaaattcgatatatttgcaaggaccaaaaacatattttagcct 3954051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 27571129 - 27571190
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||||| ||||||| ||||||||||||||| || ||||||||| ||||||||||||||    
T  27571129 ttaccagggatcaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcctt 27571190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 3938060 - 3938120
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||||||||| ||||||||| || |||| |||| |||||||||||||    
T  3938060 ttaccagggaccaaaacctaaacttgctatatttgcagggactaaaagcatattttagcct 3938120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 4565452 - 4565392
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| |||||||||||||||  | |||| ||||||||||||||||||    
T  4565452 ttaccagggaccaaaacccaaactcgctatatttgtagggactaaaaacatattttagcct 4565392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 31540555 - 31540495
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||| ||||||||| ||| ||| ||||||| || |||||||||||||||||||||||    
T  31540555 ttaccaggtaccaaaacccaaattcgttatatttgcagggaccaaaaacatattttagcct 31540495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 361 - 412
Target Start/End: Complemental strand, 27570109 - 27570058
Alignment:
Q  361 gggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 412  Q
    |||| ||||||| ||||||||||||||| |||||||||||| ||||||||||    
T  27570109 gggaacaaaacccaaactcgctatatttgcaaggaccaaaatcatattttag 27570058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 34911828 - 34911889
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||| ||||| ||||| | ||||||||||||||| || ||||||||| ||||||||||||||    
T  34911828 ttactagggatcaaaatccaaactcgctatatttgcagggaccaaaatcatattttagcctt 34911889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 14809217 - 14809153
Alignment:
Q  360 agggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttat 424  Q
    ||||||||||| | ||| |||||||||||  | ||| |||||||||||||||| |||||||||||    
T  14809217 agggaccaaaatccaaattcgctatatttgtagggatcaaaaacatattttaggcttatttttat 14809153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 424
Target Start/End: Complemental strand, 15599818 - 15599755
Alignment:
Q  361 gggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttat 424  Q
    |||||||||||| ||| |||| ||||||  | ||||||||| ||||||||||||| ||||||||    
T  15599818 gggaccaaaacccaaattcgccatatttgtagggaccaaaagcatattttagcctaatttttat 15599755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 31541622 - 31541681
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    ||||||||||| |||||| ||| ||| ||||||| || ||| ||||||||||||||||||    
T  31541622 ttaccagggacaaaaaccaaaattcgttatatttgcagggatcaaaaacatattttagcc 31541681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 35605463 - 35605517
Alignment:
Q  248 tcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcag 302  Q
    ||||||| ||||| |||||| ||||||  |||||||||||||||||||| |||||    
T  35605463 tcagcacctgccatataagcgaaaatgcaccaaatcagcaagaaagtgggttcag 35605517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 412
Target Start/End: Original strand, 15604058 - 15604114
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 412  Q
    |||| ||||||||||||| |||||||| |||||| | ||||||||||||| |||||||    
T  15604058 ttactagggaccaaaacccaaactcgccatatttgc-aggaccaaaaacacattttag 15604114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 4777699 - 4777639
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||| | |||||  |||||||| ||||||| |||| ||||||| |||||    
T  4777699 ttaccagggaccaaaatccaaacttactatatttgcaaggactaaaagcatatttaagcct 4777639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 24195666 - 24195605
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||||| ||||||| ||||||||||||||| || ||||||||||||||||||||||||    
T  24195666 ttaccagggagcaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcctt 24195605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 31848144 - 31848213
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttat 424  Q
    |||||||||||||||||| ||| ||||||||||| || |||| |||||||||||||||||| ||||||||    
T  31848144 ttaccagggaccaaaacccaaattcgctatatttgcagggactaaaaacatattttagcctaatttttat 31848213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 35212127 - 35212066
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||||||||||||| |||||||  |||||| || ||||||||||||||||||||||||    
T  35212127 ttaccagggaccaaaacccaaactcgtcatatttgcagggaccaaaaacatattttagcctt 35212066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 427
Target Start/End: Complemental strand, 13419009 - 13418937
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttatatt 427  Q
    |||||||||||||| ||| ||| |||| |||||| || |||||||||||||||||||||||||  ||||||||    
T  13419009 ttaccagggaccaatacccaaattcgcaatatttgcagggaccaaaaacatattttagccttaagtttatatt 13418937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 25046240 - 25046300
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||| ||||||||| |||||||||| |||||| |||||||||||| |||||||||||||    
T  25046240 ttaccatggaccaaaatctaaactcgccatatttgcaaggaccaaaatcatattttagcct 25046300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 12385707 - 12385774
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttt 422  Q
    |||||||||||||||| | ||||||||||||||| || ||||||||| ||||||||| ||||| ||||    
T  12385707 ttaccagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaatttt 12385774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 38742240 - 38742173
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttt 422  Q
    ||||| |||||||||||| ||||||||||||||| || |||| |||||||||||||| |||| |||||    
T  38742240 ttaccggggaccaaaacccaaactcgctatatttgcagggactaaaaacatattttaacctttttttt 38742173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 41693704 - 41693643
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||||||||||||| ||| |||| |||||| || ||| ||||||||||||||||||||    
T  41693704 ttaccagggaccaaaacccaaattcgccatatttgcagggatcaaaaacatattttagcctt 41693643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 42255017 - 42254956
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||||||||||||  |||||||| |||||| || ||||||||| ||||||||||||||    
T  42255017 ttaccagggaccaaaactcaaactcgccatatttacagggaccaaaagcatattttagcctt 42254956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 5611507 - 5611567
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||| |||||| |||||| ||||||||||||||| || ||||||||| |||||||||||||    
T  5611507 ttacgagggacgaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcct 5611567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 17066484 - 17066424
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| ||||||||||||||| || |||  |||| |||||||||||||    
T  17066484 ttaccagggaccaaaacccaaactcgctatatttgcagggattaaaagcatattttagcct 17066424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 32197909 - 32197969
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||| ||||||||||| ||| ||||||||||| || ||||||||| |||||||||||||    
T  32197909 ttaccaaggaccaaaacccaaattcgctatatttgcagggaccaaaagcatattttagcct 32197969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 41694955 - 41695015
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||  ||||||||||||||| || |||  ||||||||||||||||||    
T  41694955 ttaccagggaccaaaactcaaactcgctatatttgcagggatgaaaaacatattttagcct 41695015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 362 - 413
Target Start/End: Original strand, 31489942 - 31489993
Alignment:
Q  362 ggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 413  Q
    ||||||||||| ||||||| ||||||| || |||||||||||||||||||||    
T  31489942 ggaccaaaacccaaactcgttatatttgcagggaccaaaaacatattttagc 31489993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 36749247 - 36749314
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttt 422  Q
    |||| ||||||||||||  |||||||  |||||| ||| ||||||||||||||||||||||| |||||    
T  36749247 ttactagggaccaaaactcaaactcgtcatatttgcaatgaccaaaaacatattttagcctttttttt 36749314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 11217071 - 11217132
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    ||||||||||||||||   ||||||||||||||| || ||||||||| ||||||||| ||||    
T  11217071 ttaccagggaccaaaattcaaactcgctatatttgcagggaccaaaagcatattttaacctt 11217132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 554402 - 554362
Alignment:
Q  256 tgccacataagcaaaaatgagccaaatcagcaagaaagtgg 296  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  554402 tgccacataagcaaaaatgagccaaatcaacaagacagtgg 554362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 12933478 - 12933418
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    ||||||||||||||||   |||||| |||||||| || ||||||||| |||||||||||||    
T  12933478 ttaccagggaccaaaattcaaactcactatatttgcagggaccaaaagcatattttagcct 12933418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 24197103 - 24197163
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||| ||||||||  ||| ||||||||||| || ||||||||| |||||||||||||    
T  24197103 ttaccaggaaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagcct 24197163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 31489836 - 31489876
Alignment:
Q  256 tgccacataagcaaaaatgagccaaatcagcaagaaagtgg 296  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  31489836 tgccacataggcaaaaatgagacaaatcagcaagaaagtgg 31489876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 32543637 - 32543581
Alignment:
Q  256 tgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 312  Q
    ||||||||||||||||||||  |||||||||||||||||| | ||||| ||| ||||    
T  32543637 tgccacataagcaaaaatgattcaaatcagcaagaaagtgtactcagggactatttt 32543581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 32544774 - 32544830
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 411  Q
    |||||| ||||||||||| ||| ||||||||||| || ||||||||| |||||||||    
T  32544774 ttaccaaggaccaaaacccaaattcgctatatttgcagggaccaaaatcatatttta 32544830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 554298 - 554243
Alignment:
Q  361 gggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||||||| ||||||||||||||| || ||||||| |  |||||||||||||    
T  554298 gggaccaaaacccaaactcgctatatttgcagggaccaatattatattttagcctt 554243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 415
Target Start/End: Original strand, 39619800 - 39619851
Alignment:
Q  364 accaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    ||||||||| |||||||| |||||| || ||||||||| |||||||||||||    
T  39619800 accaaaacccaaactcgccatatttgcatggaccaaaagcatattttagcct 39619851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 9454310 - 9454236
Alignment:
Q  221 agatgccatgtatacaaatttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtg 295  Q
    |||||||| || ||||| |||  | |||||| || ||||||||||||||||||  ||| ||||||||||||||||    
T  9454310 agatgccacgtgtacaagtttacacagtcaggacctgccacataagcaaaaatatgcctaatcagcaagaaagtg 9454236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 9454860 - 9454926
Alignment:
Q  246 agtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 312  Q
    ||||||||| |  ||||| || ||||||| ||||||||||||||||||||| |||||| ||| ||||    
T  9454860 agtcagcacctatcacatgagaaaaaatgtgccaaatcagcaagaaagtgggttcagggactatttt 9454926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 413
Target Start/End: Complemental strand, 31853607 - 31853549
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 413  Q
    |||| ||||||||||| | |||||| | |||||| || |||||||||||||||||||||    
T  31853607 ttactagggaccaaaatccaaactcacaatatttgcagggaccaaaaacatattttagc 31853549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 32196739 - 32196685
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 413  Q
    |||||||||||| | |||  |||||||||| || |||||||||||||||||||||    
T  32196739 cagggaccaaaatccaaatacgctatatttgcagggaccaaaaacatattttagc 32196685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 424
Target Start/End: Complemental strand, 35837955 - 35837914
Alignment:
Q  383 atattttcaaggaccaaaaacatattttagccttatttttat 424  Q
    |||||| || ||||||||| ||||||||||||||||||||||    
T  35837955 atatttgcagggaccaaaaccatattttagccttatttttat 35837914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 36748250 - 36748198
Alignment:
Q  361 gggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||||||||| |||||| | |||||| || ||||||||||||||||||||||    
T  36748250 gggaccaaaacccaaactctc-atatttgcagggaccaaaaacatattttagcc 36748198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 36748365 - 36748316
Alignment:
Q  247 gtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtgg 296  Q
    |||||||  ||||||||| ||||||||||| ||||||||||| |||||||    
T  36748365 gtcagcatctgccacataggcaaaaatgagacaaatcagcaaaaaagtgg 36748316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 424
Target Start/End: Complemental strand, 41053873 - 41053832
Alignment:
Q  383 atattttcaaggaccaaaaacatattttagccttatttttat 424  Q
    |||||| || ||||||||| ||||||||||||||||||||||    
T  41053873 atatttgcagggaccaaaaccatattttagccttatttttat 41053832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 43869912 - 43869965
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatt 408  Q
    |||||||||||||||||| ||| | ||||||||| || ||||||||| ||||||    
T  43869912 ttaccagggaccaaaacccaaattggctatatttgcagggaccaaaaccatatt 43869965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 44568381 - 44568320
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattt 420  Q
    ||||||| |||||| ||||  | ||||||| || ||||||||| ||||||||||||||||||    
T  44568381 cagggactaaaaccaaaacgagttatatttgcagggaccaaaaccatattttagccttattt 44568320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 5610315 - 5610275
Alignment:
Q  257 gccacataagcaaaaatgagccaaatcagcaagaaagtgga 297  Q
    |||||||||||||||||| | ||||||||||| ||||||||    
T  5610315 gccacataagcaaaaatgtgacaaatcagcaaaaaagtgga 5610275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 11522 - 11586
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatt 419  Q
    |||||||||||||||||| |||  |||||||||| || |||||||||||||||||||||||||||    
T  11522 ttaccagggaccaaaacccaaatacgctatatttgcagggaccaaaaacatattttagccttatt 11586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 10374 - 10315
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||| ||||||||||  ||| ||||||||||| || ||||||||| ||||||||||||    
T  10374 ttaccaaggaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagcc 10315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 29291414 - 29291350
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttta 423  Q
    |||||||||||||| |||||||| |||||| |||||||||||| ||||||||||||| |||||||    
T  29291414 cagggaccaaaacccaaactcgccatatttgcaaggaccaaaagcatattttagcctgattttta 29291350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 17517309 - 17517369
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||  |||||||| |||||| || |||||||||||||||||||||||    
T  17517309 ttaccagggaccaaaactcaaactcgccatatttgcagggaccaaaaacatattttagcct 17517369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 34998141 - 34998201
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| ||||||||||||||| || ||| ||||| |||||||||||||    
T  34998141 ttaccagggaccaaaacccaaactcgctatatttgcagggatcaaaagcatattttagcct 34998201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 359 - 422
Target Start/End: Original strand, 1974156 - 1974219
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttt 422  Q
    |||||||||||||  ||| ||||||||||| |||||| |||||||||||||||||| |||||||    
T  1974156 cagggaccaaaactcaaattcgctatatttgcaaggatcaaaaacatattttagccatattttt 1974219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 18810591 - 18810532
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||||||||||||||| |||||| |||||||| || ||||||||| ||||||||||||    
T  18810591 ttaccagggaccaaaacccaaactcactatatttgcagggaccaaaatcatattttagcc 18810532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 21165305 - 21165246
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||||||||||||||  ||||||||||||||| || ||||||||| ||||||||||||    
T  21165305 ttaccagggaccaaaacacaaactcgctatatttgcagggaccaaaagcatattttagcc 21165246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 16995510 - 16995449
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||||||||||||| ||| ||  ||||||| || ||||||||||||||||||||||||    
T  16995510 ttaccagggaccaaaacccaaattctttatatttgcagggaccaaaaacatattttagcctt 16995449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 21953265 - 21953205
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||| | ||| ||||||||||| || ||||||||| |||||||||||||    
T  21953265 ttaccagggaccaaaatccaaattcgctatatttgcagggaccaaaagcatattttagcct 21953205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 359 - 430
Target Start/End: Complemental strand, 17516217 - 17516147
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttatattaaa 430  Q
    |||||||||||||| |||||| | |||||| || |||||||||||||||||||| ||| ||||||| |||||    
T  17516217 cagggaccaaaacccaaactcaccatatttgcagggaccaaaaacatattttagtctt-tttttattttaaa 17516147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 20897497 - 20897556
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||||||||||||||| ||| || |||||||| || ||||||||| ||||||||||||    
T  20897497 ttaccagggaccaaaacccaaattcactatatttgcagggaccaaaaccatattttagcc 20897556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 17000179 - 17000233
Alignment:
Q  258 ccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 312  Q
    |||| |||||||||||| ||||||||||||||||||||| | |||| ||||||||    
T  17000179 ccacctaagcaaaaatgtgccaaatcagcaagaaagtgggtccagggactttttt 17000233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 3276426 - 3276366
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||| |||||| |||| | ||| ||||||||||| || |||||||||||||||||||||||    
T  3276426 ttactagggactaaaatccaaattcgctatatttgcagggaccaaaaacatattttagcct 3276366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 14656229 - 14656269
Alignment:
Q  383 atattttcaaggaccaaaaacatattttagccttattttta 423  Q
    |||||| |||||||||||| |||||||||||||||||||||    
T  14656229 atatttgcaaggaccaaaaccatattttagccttattttta 14656269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 1972459 - 1972400
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    ||||||| ||| |||||| ||| ||||| ||||| || ||||||||||||||||||||||    
T  1972459 ttaccagagactaaaacccaaattcgctttatttgcagggaccaaaaacatattttagcc 1972400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 26421726 - 26421785
Alignment:
Q  239 tttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggat 298  Q
    |||| ||||||| ||  ||| ||||| ||||||||||| |||||||||||||||||||||    
T  26421726 tttgcatagtcatcatctgctacataggcaaaaatgagacaaatcagcaagaaagtggat 26421785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 363 - 425
Target Start/End: Original strand, 30253547 - 30253609
Alignment:
Q  363 gaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttata 425  Q
    |||||||||  | ||||||| ||||| || |||||||||||||||||||| ||| ||||||||    
T  30253547 gaccaaaactcatactcgctgtatttgcagggaccaaaaacatattttagtcttttttttata 30253609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 1171655 - 1171712
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||||||| | ||||||| ||||||| || ||| ||||||||||||||| ||||    
T  1171655 cagggaccaaaaaccaaactcgttatatttgcagggatcaaaaacatattttaacctt 1171712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 3279403 - 3279440
Alignment:
Q  259 cacataagcaaaaatgagccaaatcagcaagaaagtgg 296  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  3279403 cacataagcaaaaatgagccaaatcagtacgaaagtgg 3279440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 3279499 - 3279560
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||||||| |||||||   ||||||||||||||| || ||| ||||||||||||||| ||||    
T  3279499 ttaccaggaaccaaaattcaaactcgctatatttgcagggatcaaaaacatattttaacctt 3279560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 20391273 - 20391212
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    |||| ||||||||||||| ||| || |||||||| || ||||||||| ||||||||| ||||    
T  20391273 ttacgagggaccaaaacccaaattcactatatttgcagggaccaaaagcatattttaacctt 20391212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 412
Target Start/End: Original strand, 25440673 - 25440730
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 412  Q
    ||||||||||||||||   |||||||| ||||||  |||||||||||| |||||||||    
T  25440673 ttaccagggaccaaaattcaaactcgccatatttgtaaggaccaaaaatatattttag 25440730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 26421843 - 26421904
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 416  Q
    ||||||||||| |||||  ||| ||||||||||| ||  |||||||||||| ||||||||||    
T  26421843 ttaccagggactaaaactcaaattcgctatatttgcagagaccaaaaacatgttttagcctt 26421904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 12757641 - 12757601
Alignment:
Q  383 atattttcaaggaccaaaaacatattttagccttattttta 423  Q
    |||||| || ||||||||| |||||||||||||||||||||    
T  12757641 atatttgcagggaccaaaaccatattttagccttattttta 12757601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 34995173 - 34995113
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||| ||||||||  ||| ||||||||||| || ||| ||||| |||||||||||||    
T  34995173 ttaccaggaaccaaaactcaaattcgctatatttgcagggatcaaaagcatattttagcct 34995113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 355 - 420
Target Start/End: Original strand, 120985 - 121050
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattt 420  Q
    |||||||||||||||||| ||||||| ||||||| || ||||||||| |||||||||||| |||||    
T  120985 ttaccagggaccaaaacccaaactcgttatatttgcagggaccaaaagcatattttagccgtattt 121050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 119652 - 119593
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||||||||||||||  ||| ||||||||||| || ||||||||| ||||||||||||    
T  119652 ttaccagggaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagcc 119593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 30907 - 30967
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| |||||| |||||||| || ||||||||| |||||||||||||    
T  30907 ttaccagggaccaaaacccaaactcactatatttgcagggaccaaaaccatattttagcct 30967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 29788 - 29728
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||| | ||||||| | ||||| || ||||||||| |||||||||||||    
T  29788 ttaccagggaccaaaatccaaactcgttttatttgcagggaccaaaagcatattttagcct 29728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 345897 - 345957
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||| ||||||||||||| ||| ||||||||||| || |||||||||||||||||||||||    
T  345897 ttactagggaccaaaacccaaattcgctatatttgcagggaccaaaaacatattttagcct 345957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 376261 - 376325
Alignment:
Q  248 tcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 312  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||||||| |||| ||| ||||    
T  376261 tcagcacttgccacataagcaaaaatgaaccaaatcaaaaagaaagtggatccagggactatttt 376325  T

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Target: scaffold0002; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 344996 - 344936
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||||||||||||||| |||||||| |||||| || ||||||||| ||||||| |||||    
T  344996 ttaccagggaccaaaacccaaactcgccatatttgcagggaccaaaatcatatttgagcct 344936  T

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Target: scaffold0002; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 374394 - 374335
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||| ||||||||||||| ||||||||||||||| || ||| ||||| ||||||||||||    
T  374394 ttacaagggaccaaaacccaaactcgctatatttgcagggatcaaaatcatattttagcc 374335  T

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Target: scaffold0002; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 376381 - 376429
Alignment:
Q  367 aaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    |||||| ||||||||||||||| || ||||||||| |||||||||||||    
T  376381 aaaacccaaactcgctatatttgcagggaccaaaagcatattttagcct 376429  T

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Target: scaffold0230 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 431 - 490
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 414  Q
    |||||||||||||||||| |||||| |||||||| || ||||||||| ||||||||||||    
T  431 ttaccagggaccaaaacccaaactcactatatttgcagggaccaaaatcatattttagcc 490  T

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Target: scaffold0095 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 42759 - 42813
Alignment:
Q  359 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 413  Q
    |||||||||||||  |||||||| |||||| |||||||||||| |||||||||||    
T  42759 cagggaccaaaactcaaactcgccatatttgcaaggaccaaaagcatattttagc 42813  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 202753 - 202699
Alignment:
Q  241 tgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtg 295  Q
    |||||||||| ||  ||||||||||||||||| | ||||||||||||||||||||    
T  202753 tgtatagtcatcaagtgccacataagcaaaaaggtgccaaatcagcaagaaagtg 202699  T

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Target: scaffold0009; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 202638 - 202578
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 415  Q
    ||||| |||||||||| | ||||||| ||||||| || ||||||||| |||||||||||||    
T  202638 ttacccgggaccaaaatccaaactcgttatatttgcagggaccaaaagcatattttagcct 202578  T

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Target: scaffold0765 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 1919 - 1863
Alignment:
Q  355 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 411  Q
    |||| ||||| ||||||  ||||||||||||||| || ||||||||| |||||||||    
T  1919 ttactagggatcaaaactcaaactcgctatatttgcagggaccaaaatcatatttta 1863  T

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