View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143-Insertion-5 (Length: 481)
Name: NF5143-Insertion-5
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 8 - 481
Target Start/End: Complemental strand, 4996547 - 4996061
Alignment:
| Q |
8 |
ggaaacgtgattaagatttggattcttttgaaaagttgaaaaagtgaatacttgaaagcaataagaattttgcatgagaaaccataagtgaagaacaaga |
107 |
Q |
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| T |
4996547 |
ggaaacgtgattaagatttggattcttttgaaaagttgaaaaagtgattacttgaaatcaataagaattttgcatgagaaaccataagtgaagaacaaga |
4996448 |
T |
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| Q |
108 |
cacagccaaaggtagagtgtaaggggtaaagcattattacttccagaagaagaatcattcttggggataggataaggttaagaaatttggacaacctatg |
207 |
Q |
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| T |
4996447 |
cacagccaaaggtagagtgtaaggggtaaagcattattacttccagaagaagaatcattcttggggataggataaggttaagaaatttggacaacctatg |
4996348 |
T |
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| Q |
208 |
aaatttgtatagtactagagagagatgtgaaacattttggagatgatttgatgaacatgttgactatgttattgtctctttgtttgtgatttttgta--- |
304 |
Q |
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| T |
4996347 |
aaatttgtatagtactagagagagatgtgaaacattttggagatgatttgatgaacatgttgactatgttattgtctctttgtttgtgatttttgtaata |
4996248 |
T |
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| Q |
305 |
----------ataggtggctacagtaagaatattttgcttaggagaataaggaatggtgcattctaaagaaaggaaaatgacatttaatttatgtactct |
394 |
Q |
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| T |
4996247 |
gagctatagtataggtggctacagtaagaatattttgcttaggagaataaggaatggtgcattctaaagaaaggaaaatgacatttaatttatgtactct |
4996148 |
T |
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| Q |
395 |
aatctatttcaatttccaaccactaatgcagcatggtagattttgaaagaaaagaaacaaaagttaatggttggaaagattctgttc |
481 |
Q |
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| T |
4996147 |
aatctatttcaatttccaaccactaatgcagcatggtagattttgaaagaaaagaaacaaaagttaatggttggaaagaatctgttc |
4996061 |
T |
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