View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143-Insertion-9 (Length: 181)
Name: NF5143-Insertion-9
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143-Insertion-9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 8571595 - 8571769
Alignment:
| Q |
7 |
agttgggccttcaaatcctgtcacataatacaatacaatcaattttactgaaaatgaaaatcatggtctgaaaatgatgatgaagatagtaaatgattag |
106 |
Q |
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| T |
8571595 |
agttgggccttcaaatcctgtcacataatacaatacaatcaattttactgaaaatgaaaatcatggtctgaaaatgatgatgaagatagtaaatgattag |
8571694 |
T |
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| Q |
107 |
ttaccgtgtggttggacttgtaccaatctccaatgaggacagtgtaatcaccagcgggatcatcgaagggaacgg |
181 |
Q |
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| T |
8571695 |
ttaccgtgtggttggacttgtaccaatctccaatgaggacagtgtaatcaccagcgggatcatcgaagggaacgg |
8571769 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 53754308 - 53754361
Alignment:
| Q |
108 |
taccgtgtggttggacttgtaccaatctccaatgaggacagtgtaatcaccagc |
161 |
Q |
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| T |
53754308 |
taccgtatggttggacttgtaccaatcaccaataaggacagtgtaatctccagc |
53754361 |
T |
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