View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5143_high_10 (Length: 412)
Name: NF5143_high_10
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 40432010 - 40431627
Alignment:
| Q |
19 |
attatcagatatattaaagagcagttgttatagcctgagagactgtatataatttaacatcatagatgatcagataaaatttagctatacgggttttcat |
118 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40432010 |
attatcagatatattgaagagcagttgttatagcctgagagactgtatataatttaacatcatagatgatcagataaaatttagctatacgggttttcat |
40431911 |
T |
|
| Q |
119 |
gtttgaaggatgatttgcaagaaatctttaacatctgagatattccatttaaaaaaggtgttcatcaacagcatacttacagaacgatgtggagatccac |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40431910 |
gtttgaaggatgatttgcaataaatctttaacatctgagatattccatttaaaaaaggtgttcatcaacagcatacttacagaacgatgtggagatccac |
40431811 |
T |
|
| Q |
219 |
acttctcattgatactatgttcattgtcattttgttccgtctcagaaatgggttcaacatctcctgcttcagaattggattgatactcacgcggtgtaac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40431810 |
acttctcattgatactatgttcattgtcattttgttccgtctcagaaatgggttcaacatctcctgcttcagaattggattgatactcacgcggtgtaac |
40431711 |
T |
|
| Q |
319 |
agaatcttccacacgatcttcgatcaactgaagacaaataaaggttcatgtatgtagctagatctctgagagaactgatgatgt |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40431710 |
agaatcttccacacgatcttcgatcaactgaagacaaataaaggttcatgtatgtagctagatctctgagagaactgatgatgt |
40431627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University