View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5143_high_11 (Length: 383)
Name: NF5143_high_11
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 20 - 363
Target Start/End: Original strand, 42715052 - 42715395
Alignment:
| Q |
20 |
tggatttgtgcggtatatgtgcttggagaccccacgttggtaagagtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42715052 |
tggatttgtgcggtatatgtgcttggagaccccacgtttgtaagagtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctg |
42715151 |
T |
|
| Q |
120 |
gatagttgaaatctttcaaattgaaggattttggacaagtgtagggcttgccatagaacaacctaagcatggaactattgtagccacgagcgcacaaaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42715152 |
gatagttgaaatctttcaaattgaaggattttggacaagtgtagggcttgccatagaaaaacctaagcatggaactattgtagccacgagcgcacaaaaa |
42715251 |
T |
|
| Q |
220 |
gttcatatagtcagtaatatttaggtcgtatacaagtccagggtcgaccacacgattaggttgaatgtgtcctgctccgtagtcaaatggagttgccttt |
319 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42715252 |
gttcatatagtcagtaatatttaggtcatatacaagtccagggtcgaccacacgattaggttgaatgtgtcctgctccgtagtcaaatggagttgccttt |
42715351 |
T |
|
| Q |
320 |
tccttaaatgaatccaaaataggtcccccagtgttgtcttctgt |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42715352 |
tccttaaatgaatccaaaataggtcccccagtgttgtcttctgt |
42715395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 39 - 258
Target Start/End: Original strand, 42741988 - 42742207
Alignment:
| Q |
39 |
tgcttggagaccccacgttggtaagagtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttgaaatctttcaa |
138 |
Q |
| |
|
||||||||||||| || ||||| | |||||||||||| || | || ||||| | ||||||||| |||||||||| |||||||| |||||||| | || |
|
|
| T |
42741988 |
tgcttggagacccgacattggttacagtacgagtaacgttcaaaggctgtccaattttaaagtcaggaattgtgatggctggataattgaaatcaattaa |
42742087 |
T |
|
| Q |
139 |
attgaaggattttggacaagtgtagggcttgccatagaacaacctaagcatggaactattgtagccacgagcgcacaaaaagttcatatagtcagtaata |
238 |
Q |
| |
|
|||||||||||| ||||||||||| || | ||||||||||| |||| ||| || ||||| |||||| | || |||||||||| ||| ||||| ||| |
|
|
| T |
42742088 |
attgaaggatttgggacaagtgtaaggtcttccatagaacaatttaagttgggagctgttgtatccacgaccacataaaaagttcaaataatcagttata |
42742187 |
T |
|
| Q |
239 |
tttaggtcgtatacaagtcc |
258 |
Q |
| |
|
|||||||| || |||||||| |
|
|
| T |
42742188 |
tttaggtcatacacaagtcc |
42742207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 261
Target Start/End: Original strand, 42751347 - 42751569
Alignment:
| Q |
39 |
tgcttggagaccccacgttggtaagagtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttgaaatctttcaa |
138 |
Q |
| |
|
||||||||||||| || ||||| | |||||||||||| || | || ||||| | ||||||||| |||||||||| |||||||| |||||||| | || |
|
|
| T |
42751347 |
tgcttggagacccgacattggttacagtacgagtaacgttcaaaggctgtccaattttaaagtcaggaattgtgatggctggataattgaaatcaattaa |
42751446 |
T |
|
| Q |
139 |
attgaaggattttggacaagtgtagggcttgccatagaacaacctaagcatggaactattgtagccacgagcgcacaaaaagttcatatagtcagtaata |
238 |
Q |
| |
|
|||||||||||| ||||||||||| || | ||||||||||| |||| || || ||||| |||||| | || |||||||||| ||| ||||| ||| |
|
|
| T |
42751447 |
attgaaggatttgggacaagtgtaaggtcttccatagaacaatttaagttgcgagctgttgtatccacgaccacataaaaagttcaaataatcagttata |
42751546 |
T |
|
| Q |
239 |
tttaggtcgtatacaagtccagg |
261 |
Q |
| |
|
|||||||| || ||||||||||| |
|
|
| T |
42751547 |
tttaggtcatacacaagtccagg |
42751569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 64 - 315
Target Start/End: Complemental strand, 42736678 - 42736427
Alignment:
| Q |
64 |
agtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttgaaatctttcaaattgaaggattttggacaagtgtag |
163 |
Q |
| |
|
||||||||||||||| | ||| ||||| | ||||||||| |||||||||| |||||||| ||||||||| | | |||||| |||||||||||||| || |
|
|
| T |
42736678 |
agtacgagtaacattcaaagagtgtccaattttaaagtcaggaattgtgatggctggataattgaaatctattatattgaaagattttggacaagtataa |
42736579 |
T |
|
| Q |
164 |
ggcttgccatagaacaacctaagcatggaactattgtagccacgagcgcacaaaaagttcatatagtcagtaatatttaggtcgtatacaagtccagggt |
263 |
Q |
| |
|
|| | || ||||||| |||| | | ||||| |||||||| || |||||||||| ||| ||| ||| ||||||||| |||||||||||||| | |
|
|
| T |
42736578 |
ggtcttccgtagaacagtttaagttgtttattgttgtatccacgagcacataaaaagttcaaataatcaataacatttaggtcatatacaagtccaggat |
42736479 |
T |
|
| Q |
264 |
cgaccacacgattaggttgaatgtgtcctgctccgtagtcaaatggagttgc |
315 |
Q |
| |
|
| ||||| |||||||| |||| |||||||| || || |||| |||||||| |
|
|
| T |
42736478 |
ccgccacatgattaggtcgaatatgtcctgcaccatatgcaaacggagttgc |
42736427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 261
Target Start/End: Original strand, 42760809 - 42761031
Alignment:
| Q |
39 |
tgcttggagaccccacgttggtaagagtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttgaaatctttcaa |
138 |
Q |
| |
|
||||||||||||| || ||||| | ||| |||||||| || | || ||||| | ||||| ||| ||| |||||| |||||||| |||||||| | || |
|
|
| T |
42760809 |
tgcttggagacccgacattggttacagtgcgagtaacgttcaaaggctgtccaattttaatgtcaggaactgtgatggctggataattgaaatcaattaa |
42760908 |
T |
|
| Q |
139 |
attgaaggattttggacaagtgtagggcttgccatagaacaacctaagcatggaactattgtagccacgagcgcacaaaaagttcatatagtcagtaata |
238 |
Q |
| |
|
|||||||||||| ||||||||||| | | ||||||||||| |||| ||| || ||||| |||||| | || |||||||||| ||| ||||| ||| |
|
|
| T |
42760909 |
attgaaggatttgggacaagtgtaagatcttccatagaacaatttaagttgggagctgttgtatccacgaccacataaaaagttcaaataatcagttata |
42761008 |
T |
|
| Q |
239 |
tttaggtcgtatacaagtccagg |
261 |
Q |
| |
|
|||||||| || ||||||||||| |
|
|
| T |
42761009 |
tttaggtcatacacaagtccagg |
42761031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 282
Target Start/End: Original strand, 42767739 - 42767988
Alignment:
| Q |
33 |
tatatgtgcttggagaccccacgttggtaagagtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttgaaatc |
132 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||| | | | || | || |||| |||||| ||||| ||||| |||||||| |
|
|
| T |
42767739 |
tatatgtgcttggagacccaacgttggtgagagtacgagtaacatttagaaaatctctaatcttcaagttgggaattgagattgaaggataattgaaatc |
42767838 |
T |
|
| Q |
133 |
tttcaaattgaaggattttggacaagtgtagggcttgccatagaacaacctaagcatggaactattgtagccacgagcgcacaaaaagttcatatagtca |
232 |
Q |
| |
|
| |||||||| |||||||||||| | || ||||||| ||||| | |||| |||| ||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
42767839 |
taataaattgaaagattttggacaaatatatcgcttgccgtagaatatagtaaggcgagaacctttgtagccacggttgcacaaatagttcgtatagtcg |
42767938 |
T |
|
| Q |
233 |
gtaatatttaggtcgtatacaagtccagggtcgaccacacgattaggttg |
282 |
Q |
| |
|
|| ||||||||||| || |||||||||||||| || || |||||||||| |
|
|
| T |
42767939 |
gtgatatttaggtcataaacaagtccagggtccacggcatgattaggttg |
42767988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 261
Target Start/End: Complemental strand, 23042511 - 23042289
Alignment:
| Q |
39 |
tgcttggagaccccacgttggtaagagtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttgaaatctttcaa |
138 |
Q |
| |
|
||||||||||||| || ||||| | |||||||||||| || | || ||||| | |||||||| | ||| | |||| |||||||| |||||||| | || |
|
|
| T |
23042511 |
tgcttggagacccgacattggttacagtacgagtaacgttcaaaggctgtccaattttaaagttcggaactatgatggctggataattgaaatcaattaa |
23042412 |
T |
|
| Q |
139 |
attgaaggattttggacaagtgtagggcttgccatagaacaacctaagcatggaactattgtagccacgagcgcacaaaaagttcatatagtcagtaata |
238 |
Q |
| |
|
|||||||||||| ||||||||||| || | ||||||||||| |||| ||| | ||||| ||| || | || |||||||||| ||| ||||| ||| |
|
|
| T |
23042411 |
attgaaggatttgggacaagtgtaaggtcttccatagaacaatttaagttgggagttgttgtatccatgaccacataaaaagttcaaataatcagttata |
23042312 |
T |
|
| Q |
239 |
tttaggtcgtatacaagtccagg |
261 |
Q |
| |
|
|||||||| || ||||||||||| |
|
|
| T |
23042311 |
tttaggtcatacacaagtccagg |
23042289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University