View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143_high_12 (Length: 375)
Name: NF5143_high_12
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 27315618 - 27315435
Alignment:
| Q |
18 |
ttaacattgatgaaatgaaaacacaatgatgataaaagcacgagatatatacagaatattcaagcatagctttagtggctgattttatgaatagaaagtg |
117 |
Q |
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| T |
27315618 |
ttaacattgatgaaatgaaaacacaatgatgataaaagcacgagatatatacagaatattcaagcatagctttagttgctgattttatgaatagaaagtg |
27315519 |
T |
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| Q |
118 |
aattaacatttaacattcttctaatgcttacaacataacttgcacatattggcataaatatcataaggatcctgtgcgttttac |
201 |
Q |
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| T |
27315518 |
aattaacatgtaacattcttctaatgcttacaacataacttgcacatattggcataaatatcataaggatcctgtgcgttttac |
27315435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 226 - 366
Target Start/End: Complemental strand, 27315409 - 27315268
Alignment:
| Q |
226 |
gattcactacttttagtaaagttgttctccttccaaattactccaatgtcaatcaagctggaacttcat-ttttatgatgttcctatctgctgactagta |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27315409 |
gattcactacttttagtaaagttgttctccttccaaattactccaatgtcaatcaagctggaacttcattttttatgatgttcctatctgctgactagta |
27315310 |
T |
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| Q |
325 |
ttctatgctattattatgctatattaatgctaaagctgatga |
366 |
Q |
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| T |
27315309 |
ttctatgctattattatgctatattaatgctaaagctaatga |
27315268 |
T |
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