View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143_high_13 (Length: 373)
Name: NF5143_high_13
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 40804620 - 40804976
Alignment:
| Q |
1 |
atagtccatggcctcaagctttactcttatttcagaaacagaagtgttgtctccctcaaggagaagaaccttgagtcctttgggaaaatctttccattct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40804620 |
atagtccatggcctcaagctttactcttatttcagaaacagaagtgttgtctccctcaaggagaagaaccttgagtcctttgggaaaatctttccattct |
40804719 |
T |
|
| Q |
101 |
tgtaaatcattggcagtacaaaccatagctggtttagcatcctttctcagactctcatcaacatccagttccttctgcaaaaccatgacatcacaagctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40804720 |
tgtaaatcattggcagtacaaaccatagctggtttagcatcctttctcagactctcatcaacatccagttccttctgcaaaaccatgacatcacaagctt |
40804819 |
T |
|
| Q |
201 |
cattcagtaagctactagactttaattaatcaaaactcttttcagtacttcactttgtctaaatggttataaagtttccaaatagctagctggcagatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40804820 |
cattcagtaagctactagactttaattaatcaaaactcttttcagtacttcactttgtctaaatggttataaagattccaaatagctagctggcagatac |
40804919 |
T |
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| Q |
301 |
taatcactgtacaatgtgacatgccatgaaaagattaaccccaaccatattcagatg |
357 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40804920 |
taatcactgtacaaagtggcatgccatgaaaagattaaccccaaccatattcagatg |
40804976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 4640869 - 4640725
Alignment:
| Q |
1 |
atagtccatggcctcaagctttactcttatttcagaaacagaagtgttgtctccctcaaggagaagaaccttgagtcctttgggaaaatctttccattct |
100 |
Q |
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||||||||| | ||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||||| | |||||||| || |||||||||||| || |
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| T |
4640869 |
atagtccatagattcaagctttgttcttatttcagaagcagaattgttgtctccttcaaggagaagaaccctaagtccttttgggaaatctttccatcct |
4640770 |
T |
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| Q |
101 |
tgtaaatcattggcagtacaaaccatagctggtttagcatccttt |
145 |
Q |
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| T |
4640769 |
tgtaaatcattggcagtgcaaaccatagctggtttggcatccttt |
4640725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 14803290 - 14803397
Alignment:
| Q |
39 |
cagaagtgttgtctccctcaaggagaagaaccttgagtcctttgggaaaatctttccattcttgta--aatcattggcagtacaaaccatagctggttta |
136 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |||||||| ||| |
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| T |
14803290 |
cagaagtgttatctctttcaaggagaagaaccttgagtcctttgggaaaatctttccattcttataataatcattggcagtataaactatagctggctta |
14803389 |
T |
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| Q |
137 |
gcatcctt |
144 |
Q |
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|||||||| |
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| T |
14803390 |
gcatcctt |
14803397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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