View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143_high_16 (Length: 340)
Name: NF5143_high_16
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 323
Target Start/End: Complemental strand, 37770180 - 37769866
Alignment:
| Q |
9 |
cagaacctgtgatatacaaaacaaaaccttgaatgtgctaaaagcttaaccacaaaagattcagaatcaacaaaaactcaagtaacgaatagcacctaag |
108 |
Q |
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| T |
37770180 |
cagaacctctgatatacaaaacaaaaccttgaatgtgctaaaagcttaaccacaaaagattcagaatcaacaagaactcaagtaacgaatagcacctaag |
37770081 |
T |
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| Q |
109 |
cattataccacttggttgggttagctatgtggatcaatcactgaacaaaaaagataataattgaagcatcatctatgaagaatagtatcacgtcacatga |
208 |
Q |
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| T |
37770080 |
cattataccactaggttgggttagctatgtggatcaataactgaacaaaaaagataataattgaagcatcatctacgaagaatagtatcacgtcacatga |
37769981 |
T |
|
| Q |
209 |
gtatcctgaataatcacttttgataaaataaataaagcaatcatcaattatacgcaaaaattaaaaatgggacataaacctgctggtttattggagcacc |
308 |
Q |
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| T |
37769980 |
gtatcctgaataatcacttttaataaaataaataaagcaatcatcaattatacgcaaaaatcaaaaatgggacataaacctgctggtttattggagcacc |
37769881 |
T |
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| Q |
309 |
accgtaagcaacaac |
323 |
Q |
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| T |
37769880 |
accgtaagcaacaac |
37769866 |
T |
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