View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5143_high_17 (Length: 330)
Name: NF5143_high_17
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_high_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 34231984 - 34231678
Alignment:
| Q |
18 |
ataatgaccatagattctgtgaagaatatttttagggacaaaagcataatgaatggggacgtgccttttacc---tattcataccatcttggattttgaa |
114 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
34231984 |
ataatgaccatagattctatgaagaatatttttagggacaaaagaataatgaatggggacgtgtcttttaccacctattcataccatcttggattatgaa |
34231885 |
T |
|
| Q |
115 |
tagtggtttatagctagttcatatatatccatatatagacattatggattctgtatgattgtgtcnnnnnnncgggattctatatgatcatgaactaaca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34231884 |
tagtggtttatagctagttcatatatatccataaatagacattatggattctgtatgattgtgtcaaaaaaacgggattctatatgatcatgaactaaca |
34231785 |
T |
|
| Q |
215 |
ccgtgtcaaatttaagcatgctaattttgagtaggcctagtacactatagtcctcgtgactatctaaatcaaacatggtaaagttagcaacacacatcta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34231784 |
ccgtgtcaaatttaagcatgctaattttgagtaggcctagtacactatagtcctcgtgactatctaaatcaaacatggtaaagttagcaacacacatcta |
34231685 |
T |
|
| Q |
315 |
gaataat |
321 |
Q |
| |
|
||||||| |
|
|
| T |
34231684 |
gaataat |
34231678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University