View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143_high_18 (Length: 322)
Name: NF5143_high_18
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_high_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 3526678 - 3526986
Alignment:
| Q |
13 |
aaaatccgggggaaaaaatcaaacactcattagatttattcaggttcctcaaagttagctgatcgaatgaataatatttataagttcttatagaaataac |
112 |
Q |
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| T |
3526678 |
aaaatctgggggaaaaaatcaaacactcattagatttattaaggttcctcacagttagctgatcgaatgaataatatttataagttcttctagaaataac |
3526777 |
T |
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| Q |
113 |
atatacatagaaacttatgatgataaacgctttgtcttttgtttttaacttattttcttctctatttatcacaaaacacaatgcaaattcaagtattgct |
212 |
Q |
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| T |
3526778 |
atatacatagaaacttaagatgataaacgctttgtcttgtgtttttaacttattttcttctcta-ttatcacaaaacacaatgcaaattcaagtattgct |
3526876 |
T |
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| Q |
213 |
actcctactaaagaagagtgcttgccgaggcaccagtttgtgtcgcttaagtggtgcatctgttaaacattgttgataaactaaaaagtgaaatgaagag |
312 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3526877 |
actcctactaaagaagactgcttgccgaggcaccagtttgtgtcgcttaagtggtgcatctgttaaacattgttgataaactaaaaagtgaaatgaagag |
3526976 |
T |
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| Q |
313 |
gattttacct |
322 |
Q |
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|||||||||| |
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| T |
3526977 |
gattttacct |
3526986 |
T |
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