View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143_high_22 (Length: 277)
Name: NF5143_high_22
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 3 - 261
Target Start/End: Original strand, 54778331 - 54778589
Alignment:
| Q |
3 |
atcaacaatgagcaatagcatgtaatttaaatgaagaaaagaacattaatcaacaatatacagttgcatataattgaaaggaaaaaactaataataacgg |
102 |
Q |
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| T |
54778331 |
atcaacaatgagcaatagcatgtaatttaaatgaagaaaagaacattaatcaacaatatacagttgcatataattgaaaggaaaaaactaataataacgg |
54778430 |
T |
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| Q |
103 |
aacaaaggttaaattttagaataactcagatgggatatttttgtttggtagtaaagggtggatggaatatgctagttaatttttaaaaaatagatatcac |
202 |
Q |
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| T |
54778431 |
aacaaaggttaaattttagaataactcagatgggatatttttgtttggtagtaaagggtggatggaatatgctagttaatttttaaaaaatagatatcac |
54778530 |
T |
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| Q |
203 |
attcccatctataacaccaatccacataccctaaaaaaggtcactttcacagaatatga |
261 |
Q |
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| T |
54778531 |
attcccatctataacaccaatccacataccctaaaaaaggtcactttcacagaatatga |
54778589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 3 - 261
Target Start/End: Complemental strand, 54790814 - 54790556
Alignment:
| Q |
3 |
atcaacaatgagcaatagcatgtaatttaaatgaagaaaagaacattaatcaacaatatacagttgcatataattgaaaggaaaaaactaataataacgg |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54790814 |
atcaacaatgagcaatagcatgtaatttaaatgaagaaaagaacattaatcaacaatatacagttgcatataattgaaaggaaaaaactaataataacgg |
54790715 |
T |
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| Q |
103 |
aacaaaggttaaattttagaataactcagatgggatatttttgtttggtagtaaagggtggatggaatatgctagttaatttttaaaaaatagatatcac |
202 |
Q |
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| T |
54790714 |
aacaaaggttaaattttagaataactcagatgggatatttttgtttggtagtaaagggtggatggaatatgctagttaatttttaaaaaatagatatcac |
54790615 |
T |
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| Q |
203 |
attcccatctataacaccaatccacataccctaaaaaaggtcactttcacagaatatga |
261 |
Q |
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| T |
54790614 |
attcccatctataacaccaatccacataccctaaaaaaggtcactttcacagaatatga |
54790556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 3 - 261
Target Start/End: Complemental strand, 52283472 - 52283218
Alignment:
| Q |
3 |
atcaacaatgagcaatagcatgtaatttaaatgaagaaaagaacattaatcaacaatatacagttgcatataattgaaaggaaaaaactaataataacgg |
102 |
Q |
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||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52283472 |
atcaacaatgaccagtagcatgtaatttaaaagaagaaaagaacattaatcaacaatatacagttgcatataattgaaaggaaaaaactaataataacaa |
52283373 |
T |
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| Q |
103 |
aacaaaggttaaattttagaataactcagatgggatatttttgtttggtagtaaagggtggatggaatatgctagttaatttttaaaaaatagatatcac |
202 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| |||||| ||||||| | |
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| T |
52283372 |
aacaaaggttaaattttcgaataactcagatgggatatttttgactggtagtaaaggg----tggaatatgcaggttaattttaaaaaaagagatatccc |
52283277 |
T |
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| Q |
203 |
attcccatctataacaccaatccacataccctaaaaaaggtcactttcacagaatatga |
261 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52283276 |
attccattctataacaccaatccacataccctaaaaaaggacactttcacagaatatga |
52283218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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