View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143_high_25 (Length: 255)
Name: NF5143_high_25
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 23701174 - 23701323
Alignment:
| Q |
18 |
ccaacacaatcttcacagaaagagtgtgaacattttcggttttggaacatttcttcaacaggtttagcttccatacagatatcacaataggattgtttca |
117 |
Q |
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| T |
23701174 |
ccaacacaatattcacagaaagagtgtgaacattttcggttttggaacatttcttcaacaggtttagcttccatacagatatcacaataggattgtttca |
23701273 |
T |
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| Q |
118 |
actgagaagaagaataagacggcgacaaagaatattcacctacaaaagcc |
167 |
Q |
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| T |
23701274 |
actgagaagaagaataagacggcgacaaagaatattcacctacaaaagcc |
23701323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 23694629 - 23694517
Alignment:
| Q |
18 |
ccaacacaatcttcacagaaagagtgtgaacattttcggttttggaacatttcttcaacaggtttagcttccatacagatatcacaataggattgtttca |
117 |
Q |
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|||| |||||||||||||||||| |||||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||| |||| ||||||||||||| |
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| T |
23694629 |
ccaagacaatcttcacagaaagaatgtgaacatttttggttctggaacatttcttcaacgggtttagcttccatacaaatagcacagtaggattgtttca |
23694530 |
T |
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| Q |
118 |
actgagaagaaga |
130 |
Q |
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| T |
23694529 |
actgagaagaaga |
23694517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 23696760 - 23696647
Alignment:
| Q |
18 |
ccaacacaatcttcacagaaagagtgtgaacattttcggttttggaacatttcttcaacaggtttagcttccatacagatatcacaatagga-ttgtttc |
116 |
Q |
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|||||||| |||||||||||||||||||||| ||| |||||| |||||||||| || |||||||||||||||| |||||| |||| ||||| || |||| |
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| T |
23696760 |
ccaacacatccttcacagaaagagtgtgaacagttttggttttcgaacatttctgcagcaggtttagcttccatgcagatagcacagtaggatttttttc |
23696661 |
T |
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| Q |
117 |
aactgagaagaaga |
130 |
Q |
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| T |
23696660 |
aattgagaagaaga |
23696647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 8149313 - 8149388
Alignment:
| Q |
19 |
caacacaatcttcacagaaagagtgtgaacattttcggttttggaacatttcttcaacaggtttagcttccataca |
94 |
Q |
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||||||||||||||||||||||||| ||||| |||| ||| |||||||| ||||| ||||||| ||||||||| |
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| T |
8149313 |
caacacaatcttcacagaaagagtgcgaacagtttctacttttgaacattttttcaataggtttattttccataca |
8149388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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