View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5143_high_30 (Length: 241)
Name: NF5143_high_30
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_high_30 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 14749145 - 14748931
Alignment:
| Q |
19 |
tgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggctaagctacagggaaattgag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14749145 |
tgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggctaagctacagggaaattgag |
14749046 |
T |
|
| Q |
119 |
caagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14749045 |
caagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaag |
14748946 |
T |
|
| Q |
219 |
atgttagtgatgatg |
233 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
14748945 |
atgttagtgaggatg |
14748931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 14764194 - 14763988
Alignment:
| Q |
19 |
tgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggctaagctacagggaaattgag |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
14764194 |
tgggagtggtcagaaacatgagttaaatgtctccacctatcaaatgtgtatactcatgctgtttaataatgctgatagactaagctacagggaaattgag |
14764095 |
T |
|
| Q |
119 |
caagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
14764094 |
caagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgggtaaag |
14763995 |
T |
|
| Q |
219 |
atgttag |
225 |
Q |
| |
|
||||||| |
|
|
| T |
14763994 |
atgttag |
14763988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 14804733 - 14804625
Alignment:
| Q |
19 |
tgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggctaagctacagggaaattgag |
118 |
Q |
| |
|
|||||||||||| |||||||||||| |||| || ||||||||||||||||| | ||| |||||||| ||| |||| |||||||||| |||||||||| |
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|
| T |
14804733 |
tgggaatggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgag |
14804634 |
T |
|
| Q |
119 |
caagcaacc |
127 |
Q |
| |
|
|||||||| |
|
|
| T |
14804633 |
aaagcaacc |
14804625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 15251727 - 15251619
Alignment:
| Q |
19 |
tgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggctaagctacagggaaattgag |
118 |
Q |
| |
|
|||||||||||| |||||||||||| |||| || ||||||||||||||||| | ||| |||||||| ||| |||| |||||||||| |||||||||| |
|
|
| T |
15251727 |
tgggaatggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattgag |
15251628 |
T |
|
| Q |
119 |
caagcaacc |
127 |
Q |
| |
|
|||||||| |
|
|
| T |
15251627 |
aaagcaacc |
15251619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 17564405 - 17564611
Alignment:
| Q |
19 |
tgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggctaagctacagggaaattgag |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17564405 |
tgggagtggtcagaaacatgagttaaatgtctccacctatcaaatgtgtatactcatgctgtttaataatgctgatagactaagctacagggaaattgag |
17564504 |
T |
|
| Q |
119 |
caagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17564505 |
caagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgggtaaag |
17564604 |
T |
|
| Q |
219 |
atgttag |
225 |
Q |
| |
|
||||||| |
|
|
| T |
17564605 |
atgttag |
17564611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 17621252 - 17621046
Alignment:
| Q |
19 |
tgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggctaagctacagggaaattgag |
118 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
17621252 |
tgggaaaggtcagagacatgtgttaaatgtctccacctatcaaatgtgtgtactcatgctgtttaataatgctgatagactaagctacaaggaaattgag |
17621153 |
T |
|
| Q |
119 |
caagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaag |
218 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
17621152 |
caagcaactgaaattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtcctgaggaaggagcctacgagtaaag |
17621053 |
T |
|
| Q |
219 |
atgttag |
225 |
Q |
| |
|
||||||| |
|
|
| T |
17621052 |
atgttag |
17621046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 15194631 - 15194425
Alignment:
| Q |
22 |
gaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggctaagctacagggaaattgagcaa |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
15194631 |
gaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctatttaataatgctgatagattaagctacaaggaaattgagcaa |
15194532 |
T |
|
| Q |
122 |
gcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaagatg |
221 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| ||| ||| |
|
|
| T |
15194531 |
gcaactgagattccagcttcagatttgaagatgtgcctgcaatctttggctttggttaagggtaaaaatgtcctaaggaaggagcctatgaataattatg |
15194432 |
T |
|
| Q |
222 |
ttagtga |
228 |
Q |
| |
|
||||||| |
|
|
| T |
15194431 |
ttagtga |
15194425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 15205316 - 15205110
Alignment:
| Q |
22 |
gaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggctaagctacagggaaattgagcaa |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
15205316 |
gaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctatttaataatgctgatagattaagctacaaggaaattgagcaa |
15205217 |
T |
|
| Q |
122 |
gcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaagatg |
221 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | ||||||| ||||||||||||||| ||| ||| |
|
|
| T |
15205216 |
gcaactgagattccagcttcagatttgaagatgtgcctgcaatctttggctttggttaagggtaaagatgtcctacggaaggagcctatgaataattatg |
15205117 |
T |
|
| Q |
222 |
ttagtga |
228 |
Q |
| |
|
||||||| |
|
|
| T |
15205116 |
ttagtga |
15205110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 15215049 - 15214843
Alignment:
| Q |
22 |
gaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggctaagctacagggaaattgagcaa |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
15215049 |
gaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctatttaataatgctgatagattaagctacaaggaaattgagcaa |
15214950 |
T |
|
| Q |
122 |
gcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaagatg |
221 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | ||||||| ||||||||||||||| ||| ||| |
|
|
| T |
15214949 |
gcaactgagattccagcttcagatttgaagatgtgcctgcaatctttggctttggttaagggtaaatatgtcctatggaaggagcctatgaataattatg |
15214850 |
T |
|
| Q |
222 |
ttagtga |
228 |
Q |
| |
|
||||||| |
|
|
| T |
15214849 |
ttagtga |
15214843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 24394614 - 24394400
Alignment:
| Q |
19 |
tgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggctaagctacagggaaattgag |
118 |
Q |
| |
|
|||||| |||||||| |||||||||||||| |||||||| ||||||||||| || ||||| || ||||||||||||| || ||||||| ||| |||||| |
|
|
| T |
24394614 |
tgggaagggtcagaagcatgagttaaatgtctctacctaccaaatgtgtgtccttatgcttttcaataatgctgataaacttagctacaaggagattgag |
24394515 |
T |
|
| Q |
119 |
caagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaag |
218 |
Q |
| |
|
|||||||| |||||||| || | ||| | ||||| || |||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
24394514 |
caagcaactgagattcctgccccggatcttaagagatgtctgcaatcattggctttagttaagggaagaaatgtccttagaaaggagccgatgagtaaag |
24394415 |
T |
|
| Q |
219 |
atgttagtgatgatg |
233 |
Q |
| |
|
||||| |||| |||| |
|
|
| T |
24394414 |
atgttggtgaggatg |
24394400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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