View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143_high_33 (Length: 220)
Name: NF5143_high_33
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 39470020 - 39470202
Alignment:
| Q |
20 |
aatcagatggcgcaaccatggtgcccttaggtggtggtttacgtagagagcacacaaaacggaccccagtattctctacagcaagtgcgatcaccttaac |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39470020 |
aatcagatggcgcaaccatggtgcccttaggtggtggtttacgtagagaccacacaatacggaccccagtattctctacagcaagtgcgatccccttaac |
39470119 |
T |
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| Q |
120 |
ctgatccccatcgaaaaaaccctgctcccgaagcagaggaaagctaccgtggaaggaggatgatcatcaagccacttgacaat |
202 |
Q |
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| T |
39470120 |
ctgatcctcatcgaaaaaaccctgctcccgaagcagaggaaaactaccgaggaaggaggctgatcatcaagccacttgacaat |
39470202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 39457555 - 39457738
Alignment:
| Q |
20 |
aatcagatggcgcaaccatggtgcccttaggtggtggtttacgtagagagcacacaaaacggaccccagtattctctacagcaagtgcgatcaccttaac |
119 |
Q |
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|||||||||||||| ||||||| |||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||| ||||||| |
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| T |
39457555 |
aatcagatggcgcattcatggtgtccttcggtggtggtttacgtagagaccacacaaatcggaccccagtattctctacagcaagggcgatctccttaac |
39457654 |
T |
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| Q |
120 |
ctgatccccatcgaaaaa-accctgctcccgaagcagaggaaagctaccgtggaaggaggatgatcatcaagccacttgacaat |
202 |
Q |
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| T |
39457655 |
ctgatcctcatcgaaaaaccccctgctcccgaagcagaggaaaacttccgaggaaggaggttgatcatcaagccacttgacaat |
39457738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 39463817 - 39463996
Alignment:
| Q |
20 |
aatcagatggcgcaaccatggtgcccttaggtggtggtttacgtagagagcacacaaaacggaccccagtattctctacagcaagtgcgatcaccttaac |
119 |
Q |
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| T |
39463817 |
aatcagatggcgcaatcatggcgccctttggtgggggtttacgtagagaccaaacaaagcgagccccactattctcaatagcaagtgcaatctccttaac |
39463916 |
T |
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| Q |
120 |
ctgatccccatcgaaaaaacc-ctgctcccgaagcagaggaaagctaccgtggaaggaggatgatcatcaagccacttga |
198 |
Q |
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| T |
39463917 |
ctgatcttcatcgaaagaacctctgctcccgaagcagaggaaaactactgaggaaggaggttgatcatcaagccacttga |
39463996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 39487378 - 39487199
Alignment:
| Q |
20 |
aatcagatggcgcaaccatggtgcccttaggtggtggtttacgtagagagcacacaaaacggaccccagtattctctacagcaagtgcgatcaccttaac |
119 |
Q |
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||||||| || | ||||||| | ||||| |||| |||||||| ||||| |||||||||||| | ||| |||||| | |||| |||| ||| | ||||| |
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| T |
39487378 |
aatcagagggtgaaaccatgattcccttcggtgagggtttacgcagagaccacacaaaacgggctccacaattctcaatagcatgtgcaatctctttaac |
39487279 |
T |
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| Q |
120 |
ctgatccccatcgaaaaaaccc-tgctcccgaagcagaggaaagctaccgtggaaggaggatgatcatcaagccacttga |
198 |
Q |
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| T |
39487278 |
ctgatcctcatcgaaagagcccctgctcccgaagcagaggaaaactaccgaggaaggaggttgatcatcaagccacttga |
39487199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 196
Target Start/End: Complemental strand, 39476410 - 39476248
Alignment:
| Q |
35 |
ccatggtgcccttaggtggtggtttacgtagagagcacacaaaacggaccccagtattctctacagcaagtgcgatcaccttaacctgatccccatcgaa |
134 |
Q |
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|||| |||||||| | ||| |||||||| ||||| ||||| || || ||||| ||||||| |||||| |||||||| ||||||||||||| |||| || |
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| T |
39476410 |
ccatagtgccctttgctggaggtttacgcagagaccacacgaagcgtgccccactattctcaacagcatgtgcgatctccttaacctgatcttcatcaaa |
39476311 |
T |
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| Q |
135 |
aaaaccc-tgctcccgaagcagaggaaagctaccgtggaaggaggatgatcatcaagccactt |
196 |
Q |
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| T |
39476310 |
ataacccctactcccgaagcagaggaaaactacggaggaaggaggttgatcatcaagccactt |
39476248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 39451913 - 39451734
Alignment:
| Q |
20 |
aatcagatggcgcaaccatggtgcccttaggtggtggtttacgtagagagcacacaaaacggaccccagtattctctacagcaagtgcgatcaccttaac |
119 |
Q |
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||||||| || ||| |||||| |||||| |||| ||||||||| ||||| || || || || ||||| ||||||| | |||| |||||||| ||||||| |
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| T |
39451913 |
aatcagaaggtgcagccatggcgccctttggtgctggtttacggagagaccatacgaagtgggccccactattctcaatagcatgtgcgatctccttaac |
39451814 |
T |
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| Q |
120 |
ctgatccccatcgaaaaaaccc-tgctcccgaagcagaggaaagctaccgtggaaggaggatgatcatcaagccacttga |
198 |
Q |
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||| ||| |||||||| ||||| ||||||| |||||||||||| | || | ||| |||| |||||||||||||| |||| |
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| T |
39451813 |
ctggtcctcatcgaaacaacccctgctcccaaagcagaggaaaacaacagaagaaagaggttgatcatcaagccagttga |
39451734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 39484176 - 39483999
Alignment:
| Q |
20 |
aatcagatggcgcaaccatggtgcccttaggtggtggtttacgtagagagcacacaaaacggaccccagtattctctacagcaagtgcgatcaccttaac |
119 |
Q |
| |
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||||||| || ||| ||||||||||||| | | |||||||| ||||| ||||| || || ||||| ||||||| ||| || |||||||| ||||||| |
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| T |
39484176 |
aatcagagggtgcagccatggtgccctttactagaggtttacgcagagaccacacgaagcgtgccccactattctcaacaacatgtgcgatctccttaac |
39484077 |
T |
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| Q |
120 |
ctgatccccatcgaaa-aaaccctgctcccgaagcagaggaaagctaccgtggaaggaggatgatcatcaagccactt |
196 |
Q |
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|||||| |||| ||| || |||| ||||| |||||||||||| |||| | ||||||||| |||| || ||||||||| |
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| T |
39484076 |
ctgatcttcatcaaaataacccctactcccaaagcagaggaaaactacggaggaaggaggttgattatgaagccactt |
39483999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 39455455 - 39455361
Alignment:
| Q |
105 |
tgcgatcaccttaacctgatccccatcgaaaaaaccct-gctcccgaagcagaggaaagctaccgtggaaggaggatgatcatcaagccacttga |
198 |
Q |
| |
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||||||| |||||||||||||| |||| ||| |||| | ||| |||||||| |||||| | || | |||| |||| ||||||||||||||||||| |
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| T |
39455455 |
tgcgatctccttaacctgatcctcatcaaaacaacctttgcttccgaagcaaaggaaaacgacggaggaaagaggttgatcatcaagccacttga |
39455361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 198
Target Start/End: Complemental strand, 39472928 - 39472764
Alignment:
| Q |
35 |
ccatggtgcccttaggtggtggtttacgtagagagcacacaaaacggaccccagtattctctacagcaagtgcgatcaccttaacctgatccccatcgaa |
134 |
Q |
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|||||||||||| ||||| |||||||| ||||| || | || ||| ||||| ||||||| | ||| ||| ||| | ||||||||||| | ||||| |
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| T |
39472928 |
ccatggtgccctccggtggaggtttacgaagagaccatatgaaccgggccccactattctcaatagcgcatgcaatctgcgtaacctgatcctcgtcgaa |
39472829 |
T |
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| Q |
135 |
aaaaccc-tgctcccgaagcagaggaaagctaccgtggaaggaggatgatcatcaagccacttga |
198 |
Q |
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| T |
39472828 |
agaacccatacttccgaagcagaggaaaactactgaggatgcaggttgatcatcaagccacttga |
39472764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 39461079 - 39460984
Alignment:
| Q |
104 |
gtgcgatcaccttaacctgatccccatcgaaaaaaccc-tgctcccgaagcagaggaaagctaccgtggaaggaggatgatcatcaagccacttga |
198 |
Q |
| |
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|||||||| |||||| ||||||| ||||||| |||| | |||| |||||||||||| |||| | |||| |||| ||||||||||||||||||| |
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| T |
39461079 |
gtgcgatctccttaatctgatcctcatcgaaggtacccctagtcccaaagcagaggaaaactacggaggaaagaggttgatcatcaagccacttga |
39460984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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