View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143_high_5 (Length: 597)
Name: NF5143_high_5
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 12 - 578
Target Start/End: Complemental strand, 4997110 - 4996543
Alignment:
| Q |
12 |
atcatcataaataccggtttctgtgaggtcgattgatacaacggatttattccacgaatcgcaggttatgcctctccagttacaaggattatgatctgtg |
111 |
Q |
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| T |
4997110 |
atcaccataaataccggtttctgtgaggtcgattgatacaacggatttattccgcgaatcgcaggttatgcctctccagttacaaggattatgatctgtg |
4997011 |
T |
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| Q |
112 |
tttggaagccaatcattgagacttttgtttttgtcatcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagagtgaaaaggtggttc |
211 |
Q |
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| T |
4997010 |
tttggaagccaatcattgagacttttgtttttgtcatcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagagtgaaaaggtggttc |
4996911 |
T |
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| Q |
212 |
catttgaacatagtagtgaaaagagaagaatgaaaatgagttttttcatgttgtgaat--ttttggtagtgtgtgtgagaggatgagaatgatcatg-tt |
308 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || || |
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| T |
4996910 |
catttgaacatactagtgaaaagagaagaatgaaaatgagttttttcatgttgtgaatttttttggtagtgtgtgtgagaggatgagaatgatcgtgttt |
4996811 |
T |
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| Q |
309 |
ttttgaaggggtgttaattttgtatttgtatagttgaagatgctgaagtttggtagtatgcgtcacacacttcttagtgattttcctcgtgaataagtag |
408 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4996810 |
ttttgaaggggtgttaa-tttgtatttgtatagttgaagatgctaaagtttggtagtatgagtcacacacttcttagtgattttcctcgtgaataagtag |
4996712 |
T |
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| Q |
409 |
aagctcctcttattcatgcatgaagatagagacagttcacaagattcactttagttgttgaacttgaagatagtaacaaaaaaggtcttgnnnnnnnngg |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4996711 |
aagctcctcttattcatgcatgaagatagagacagttcacaagattcactttagttgttgaacttgaagatagtaacaaaaaaggtcttg-attttttgg |
4996613 |
T |
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| Q |
509 |
gattattatggagaaaagtgtgcaatcaatgatgaacggttggaaaaaggtttgaaagtggagggggaaa |
578 |
Q |
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| T |
4996612 |
gattattatggagaaaagtgtgcaatcaatgatgaacggttggaaaaaggtttgaaagtggagggggaaa |
4996543 |
T |
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