View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143_low_14 (Length: 370)
Name: NF5143_low_14
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 36 - 307
Target Start/End: Complemental strand, 27422103 - 27421836
Alignment:
| Q |
36 |
tagttattgggcacgtttacgaatgttaaatgtgnnnnnnnncggttgcttggagagaaagaatgtccaaatgatgaattcagttgagaggagaaaatta |
135 |
Q |
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| T |
27422103 |
tagttattgggcacgtttccgaatgtgaaatgtgttttttttcggttgcttggagagaaagaatgtccaaatgatgaattcagttgagaggagaacatta |
27422004 |
T |
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| Q |
136 |
ttctttttctcatgagaacgtcactgttgtttcagctttgtttgaagaaaacacgcatggtgcttgcaagctgtgatctagtggatgtgttgatgtcact |
235 |
Q |
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| T |
27422003 |
ttctttttctcatgagaacgtcgctgttgtttcagctttgtttgaagaaaacacgcatggtgcttgcaagctgtgatctagtggatgtgttgatgtcact |
27421904 |
T |
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| Q |
236 |
ttgcagtcctttctattttgaccagaatgttctcaaattaatcgttcttcttgtgtaaactaaattatgttc |
307 |
Q |
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| T |
27421903 |
ttgcagtcctttgtattttgaccagaatgttctca----aatcgttcttcttgtgtaaactaaattatgttc |
27421836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 325 - 358
Target Start/End: Complemental strand, 27421818 - 27421785
Alignment:
| Q |
325 |
aaggcttgagattcttaaaccattcaatgatgat |
358 |
Q |
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| T |
27421818 |
aaggcttgagattcttaaaccattcaatgatgat |
27421785 |
T |
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