View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143_low_15 (Length: 344)
Name: NF5143_low_15
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 33535164 - 33535492
Alignment:
| Q |
9 |
ggtttacgtgtaatttagaagagaatactttttcaacaaatataaagcattgaaaagcaaatatatgatttctcctagctaatcacagcaaacaattatc |
108 |
Q |
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| T |
33535164 |
ggtttacgtgtaatttagaagagaatactttttgaccaaaaataaagcattgaaaagcaaatatatgatttctcctagctaatcactgcaaacaattatc |
33535263 |
T |
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| Q |
109 |
aaatagagaaatgagttttgtgcgggaaacaaaatgaattgacatataatataataacacgtcggccaaaattaaccacattccattatgaaatcaaata |
208 |
Q |
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| T |
33535264 |
aaatagagaaatgagttttgtgtgggaaacaaaatgaattgacatataatataataacacgtcggccaaaattaaccacattccattatgaaatcaaata |
33535363 |
T |
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| Q |
209 |
tgattaataattgttataatttgtatctttcctagccttgaaattaataacaaatttgttatgatagctggtaacaacttctcctgttgaaaaaagttca |
308 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33535364 |
tgattaataattgttataatatgtatctttcctagccttgaaattaataacaaatttgttatgatagctggtaacaacttctcctgttgaaaaaagttca |
33535463 |
T |
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| Q |
309 |
agatttggtgattgatatatatgatgatg |
337 |
Q |
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| T |
33535464 |
agatttggtgattgatatatatgatgatg |
33535492 |
T |
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