View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5143_low_2 (Length: 687)
Name: NF5143_low_2
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 454; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 10 - 668
Target Start/End: Complemental strand, 26634497 - 26633863
Alignment:
| Q |
10 |
aagaatattgggggcaaaaagtttattccaagattcaactgaatggaacaaagttaatagattattgctactttataccaaggtctctattctttgtctt |
109 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26634497 |
aagaatattgggggcaaagagtttattccaagattcaa-----tggaacaaagttaatagattattgctactttataccaaggtctcttttctttgtctt |
26634403 |
T |
|
| Q |
110 |
tggacctatattatatagaacggtaacagatttgtggctcttgttttgatgatagattatgagcttcggctcatactcttgtgtgttgtttggaagtcta |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26634402 |
tggacctatattatatagaacggtaacagattcgtggctcttgttttgatgatagatgatgagcttcggctcatactcttgtgtgttgtttggaagtcta |
26634303 |
T |
|
| Q |
210 |
atgtccaaaccatccaagttggtaaatgaatacgatcccagctccataaaattcgagagattagtgtttgcaattggaccataggatatccgatctcttc |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26634302 |
atgtccaaaccatccaagttggtaaatgaatacggtcccagctccataagattcgagagattagtgtttgcaattggaccataagatatccgatct---- |
26634207 |
T |
|
| Q |
310 |
aatcatcgaaagatgactgaacaaatttattgtaaattgatatctgatgtaacaaactttannnnnnnnagggatcataaaccattattaacatcactat |
409 |
Q |
| |
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|| || ||| ||||||||||||||||||||||||| ||||||| |||| |||||||| ||||||||||||| |||||||| |
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| T |
26634206 |
----atgaaaggat---------aatttattgtaaattgatatctgat-taacaaattttattttttttagggatcacaaaccattattaatatcactat |
26634121 |
T |
|
| Q |
410 |
acacacaactcatgcaaaggaaaatgaccccatttgcatttattgtaactcccaattcacagtatatatgtggtaccacaattgggatgcctctgaacct |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26634120 |
acacacaactcatgcaaaggaaaatgaccccatttgcatttattgtaactcccaattcacagtatatatgtggtaccacaattgggatgcctctgaacct |
26634021 |
T |
|
| Q |
510 |
tagtgtaattttacctcattttattttgttctatcataagttagtgggactacttagggtagttgatccgtcggggtcagataacttgaagatggcatta |
609 |
Q |
| |
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|||| |||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26634020 |
tagtttaattttacctcattttattttgttcaatcataagttagtaggaccacttagggtagttga-ccgtcggggtcagataacttgaagatggcatta |
26633922 |
T |
|
| Q |
610 |
ccatttccagcaaatggattgtctttgaccattcaaatcttattaaaccatatattaat |
668 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |||| |
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| T |
26633921 |
ccatttccagcaaatggattgtctttgaccatgcaaatctaattaaaccttataataat |
26633863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 307 - 668
Target Start/End: Complemental strand, 26611573 - 26611213
Alignment:
| Q |
307 |
ttcaatcatcgaaagatgactgaacaaatttattgtaaattgatatctgatgtaacaaactttannnnnnnnagggatcataaaccattattaacatcac |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
26611573 |
ttcaatcatcgaaagatgactgaacaaatttattgtaaattgatatctgatgtaacaaactttattttttttagggatcacaaaccattattaacatcac |
26611474 |
T |
|
| Q |
407 |
tatacacacaactcatgcaaaggaaaatgaccccatttgcatttattgtaactcccaattcacagtatatatgtggtaccacaattgggatgcctctgaa |
506 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26611473 |
tatacacacaactcatgcaaaggaaaatgaccccatttgtatttattgtaactcccaattcacagtatatatgtggtaccacaattgggatgccactgaa |
26611374 |
T |
|
| Q |
507 |
ccttagtgtaattttacctcattttattttgttctatcataagttagtgggactacttagggtagttgatccgtcggggtcagataacttgaagatggca |
606 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| ||||||| |||| ||||| ||||||||||||||| |||||| ||||||||||||||||| |
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| T |
26611373 |
ccttagattaattttacctcattttattttgttcaatcat-agttagtaggacaacttatggtagttgatccgtcagggtcaaataacttgaagatggca |
26611275 |
T |
|
| Q |
607 |
ttaccatttccagcaaatggattgtctttgaccattcaaatcttattaaaccatatattaat |
668 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
26611274 |
ttaccatttccagcaaatggattgtctttgaccattcaaatcttattaaaccctatattaat |
26611213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 329 - 536
Target Start/End: Complemental strand, 26626743 - 26626537
Alignment:
| Q |
329 |
aacaaatttattgtaaattgatatctgatgtaacaaactttannnnnnnnagggatcataaaccattattaacatcactatacacacaactcatgcaaag |
428 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||| |||||||| |
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| T |
26626743 |
aacaaatttattgtaaattgatatatgatgtaacaaactttggtttttttagggatcacaaaccattactaacatcactatacacacaactaatgcaaag |
26626644 |
T |
|
| Q |
429 |
gaaaatgaccccatttgcatttattgtaactcccaattcacagtatatatgtggtaccacaattgggatgcctctgaaccttagtgtaattttacctcat |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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|
| T |
26626643 |
gaaaatgaccccatttgcatttattgtaactcccaattcaaagtatatatgtggtaccacaattgggatgcc-ctgaaccttagtttaattttacctcat |
26626545 |
T |
|
| Q |
529 |
tttatttt |
536 |
Q |
| |
|
|||||||| |
|
|
| T |
26626544 |
tttatttt |
26626537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 34 - 278
Target Start/End: Complemental strand, 26627046 - 26626803
Alignment:
| Q |
34 |
attccaagattcaactgaatggaacaaagttaatagattattgctactttataccaaggtctctattctttgtctttggacctatattatatagaacggt |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
26627046 |
attccaagattcaactgaatggaacaaagttaatacattattactaatttataccaaggtttcttttctttgtctttggacctatattatatagaacggt |
26626947 |
T |
|
| Q |
134 |
aacagatttgtggctcttgttttgatgatagattatgagcttcggctcatactcttgtgtgttgtttggaagtctaatgtccaaaccatccaagttggta |
233 |
Q |
| |
|
||| |||||| ||||| |||| ||||||||| |||| ||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||| |
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|
| T |
26626946 |
aacgaatttgtagctctagtttcaatgatagatgatgaccttcggctcatactcttgtgtattttttgggagtctaatgtccaaaccatccaagttcgta |
26626847 |
T |
|
| Q |
234 |
aatgaatacgatcccagctccataaaattcgagagattagtgttt |
278 |
Q |
| |
|
|||| |||||| ||| || ||||| |||||||||||||||||| |
|
|
| T |
26626846 |
aatgcatacga-cccgacttcataaggttcgagagattagtgttt |
26626803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 10 - 166
Target Start/End: Complemental strand, 26611897 - 26611736
Alignment:
| Q |
10 |
aagaatattgggggcaaaaagtttattccaagattcaactgaatggaacaaagttaatagattattgctactttataccaaggtctctattctttgtctt |
109 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| || |
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| T |
26611897 |
aagaatattggggacaaagagtttattccaagattcaactgaatggaacaaagttaatagattattgctactttataccaaggtttattttctttgtgtt |
26611798 |
T |
|
| Q |
110 |
tggacctat----attatatagaacggtaacagattt-gtggctcttgttttgatgatagat |
166 |
Q |
| |
|
||||||| | ||||||||||||||||| ||||| || |||||||||||||||| |||| |
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|
| T |
26611797 |
tggacctgtgttaattatatagaacggtaagggatttggtagctcttgttttgatgacagat |
26611736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 591 - 667
Target Start/End: Complemental strand, 26626176 - 26626100
Alignment:
| Q |
591 |
taacttgaagatggcattaccatttccagcaaatggattgtctttgaccattcaaatcttattaaaccatatattaa |
667 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26626176 |
taacttgaagatggcattaccattaccagcaaatagattgtctttgaccattcaaatcttactaaaccatatattaa |
26626100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 26646477 - 26646385
Alignment:
| Q |
40 |
agattcaactgaatggaacaaagttaatagattattgctactttataccaaggtctctattctttgtctttggacctatattatatagaacggt |
133 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||| | | ||||| | | | |||||||| |||||| |||||| |||||||||||| |
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|
| T |
26646477 |
agattccactgaatggaacaaagtttatagattattgctac-tagtgccaagattttttttctttgtttttggatctatataatatagaacggt |
26646385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 303
Target Start/End: Complemental strand, 26611654 - 26611603
Alignment:
| Q |
252 |
tccataaaattcgagagattagtgtttgcaattggaccataggatatccgat |
303 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
26611654 |
tccataaaacttgagagattaatgtttgcaattgaaccgtaggatatccgat |
26611603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 580
Target Start/End: Complemental strand, 26626247 - 26626195
Alignment:
| Q |
527 |
attttattttgttctatcataagttagtgggactacttagggtagttgatccgt |
580 |
Q |
| |
|
|||||||||| ||| |||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
26626247 |
attttatttttttcaatcata-gttagtaggaccacttagggtagttgatccgt |
26626195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 403 - 443
Target Start/End: Complemental strand, 26642052 - 26642012
Alignment:
| Q |
403 |
tcactatacacacaactcatgcaaaggaaaatgaccccatt |
443 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
26642052 |
tcactatacacacaactcatgcaaataaaaattaccccatt |
26642012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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