View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5143_low_23 (Length: 272)
Name: NF5143_low_23
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_low_23 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 14748107 - 14748368
Alignment:
| Q |
11 |
tccaataatattgaaacgattgagcgaaggagcattaaagtactgtataacaactggcatttattgattaatctaagagtatttctctcgaccagagaac |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14748107 |
tccaagaatattgaaacgattgagcgaaggagcattaaagtactgtataacaactggcatttattgattaatctaagagtatttctctcgaccagagaac |
14748206 |
T |
|
| Q |
111 |
acataactgcatagaagggaaaaacattcatggttttacaaagtttagagggctaattaattattaaaacataactgcatcataaaactgacttaatcgc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14748207 |
acataactgcatagaagggaaaaacattcatggttttacaaagtttagagggctaattaattattaaaacataactgcatcataaaactgacttaatcgc |
14748306 |
T |
|
| Q |
211 |
agcagtatcggaaattaacatagatattaaaaataatattgagagaggacatacaaaatatt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14748307 |
agcagtatcggaaattaacatagatattaaaaataatattgagagaggacatacaaaatatt |
14748368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University