View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143_low_24 (Length: 264)
Name: NF5143_low_24
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 2 - 242
Target Start/End: Complemental strand, 3985984 - 3985746
Alignment:
| Q |
2 |
acataaacgacataacaaaagacacattatatagacataacacccaaaagaaaaccttatactccgcacatcaaaactccaataaaaacaccaccaaact |
101 |
Q |
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| T |
3985984 |
acataaatgatataacaaaaggcacattatatagacataacacctaaaagaaaaccttatactccgcacatcaaaactccaataaaaacaccaccaaact |
3985885 |
T |
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| Q |
102 |
aattgctaccataaaaatcaatagaaactaaccaccaaagtcaaaaccaaatccttacacaactgcataaatcaaaagtaaagacagaacctcaaacttc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3985884 |
aattgctaccataaaaatcaatagaaactaaccaccaaagtc--aaccaaatccccacataactgcataaatcaaaagtaaagacagaacctcaaacttc |
3985787 |
T |
|
| Q |
202 |
atcatggatgactgcaaacacaagtttcaaacaccaatcgt |
242 |
Q |
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| T |
3985786 |
atcatggatgactgcaaacacaagtttcaaacaccaatcgt |
3985746 |
T |
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