View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143_low_26 (Length: 254)
Name: NF5143_low_26
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 37074441 - 37074207
Alignment:
| Q |
1 |
ttatatcttgtgatcgtggacagggtttgttctgttcctctctctcatgatagatagattgcatcattacataagagagcttcgacttctcagaaatgcc |
100 |
Q |
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| T |
37074441 |
ttatatcttgtgatcgtggacagggtttgttctgttcctctctctcatgatagatagattgcatcattacataagagagcttcgacttctcagaaatgcc |
37074342 |
T |
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| Q |
101 |
gtagagacagggaagaaacaaaatcgatgttttcagaacaatacaaacatcaaagcaatggagcacacgtccttgaaggaagaaattggtgcattgaggt |
200 |
Q |
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| T |
37074341 |
gtagagacagggaagaaacaaaatcgatgttttcagaacaatacaaacatcaaagcaatggagcacacgtccttgaaggaagaaattggtgcattgaggt |
37074242 |
T |
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| Q |
201 |
tcaaaattgagaaactagaatctgaatgtgaggta |
235 |
Q |
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| T |
37074241 |
tcaaaattgagaaactagaatctgaatgtgaggta |
37074207 |
T |
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Back To:
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 17428878 - 17428941
Alignment:
| Q |
21 |
cagggtttgttctgttcctctctctcatgatagatagattgcatcattacataagagagcttcg |
84 |
Q |
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|||| ||||| |||||||||||||| ||||| ||||||||||| || ||||||||||||||||| |
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| T |
17428878 |
caggttttgtgctgttcctctctctaatgattgatagattgcaccactacataagagagcttcg |
17428941 |
T |
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