View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143_low_27 (Length: 247)
Name: NF5143_low_27
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 40393313 - 40393471
Alignment:
| Q |
12 |
atcatcaaatcaattgtactatccagtattacattcaatcggaataacaaagttattttgatatacaatgcattcttatccttgactgcaaattttactg |
111 |
Q |
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| T |
40393313 |
atcatcaaatcaattgtcctatccaatgttatatgcaatgggaataacaaagttcttttgatatacaatccattcttatccttgactgcaaattttactt |
40393412 |
T |
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| Q |
112 |
ctttaattttatcaatagttatgagaaaatggctttg--atatattatctgcttatgca |
168 |
Q |
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| T |
40393413 |
ctttcattttatcaatagttatgagaaaatggcattgatatatattatctgcttatgca |
40393471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 52412196 - 52412097
Alignment:
| Q |
14 |
catcaaatcaattgtactatccagtattacattcaatcggaataacaaagttattttgatatacaatgcattcttatccttgactgcaaattttactgct |
113 |
Q |
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| T |
52412196 |
catcaaatcaattgtattgtccaatattatatgaaatgagaataaaaaagttattctgctatacaattcattcttattcttgactgcaaatttttctgct |
52412097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 14677021 - 14676891
Alignment:
| Q |
12 |
atcatcaaatcaattgtactatccagtattacattcaatcggaataacaaagttattttgatatacaatgcattcttatccttgactgcaaattttactg |
111 |
Q |
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| T |
14677021 |
atcaacaaatcaattgtactatccaatattatatgcaatgggaataataaagttctcttgatatacagtccacacttattcttggttgaaaattttacgg |
14676922 |
T |
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| Q |
112 |
ctttaattttatcaatagttatgagaaaatg |
142 |
Q |
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| T |
14676921 |
ttttactattgttaatagttatgaaaaaatg |
14676891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 17667356 - 17667488
Alignment:
| Q |
12 |
atcatcaaatcaattgtactatccagtattacattcaatcggaataacaaagttattttgatatacaatgcattcttatccttgactgcaaattttactg |
111 |
Q |
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|||| |||||||||| ||||||||| ||||| || |||| ||||||| |||||| | |||||||||| | | ||||| |||| || ||||||||| | |
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| T |
17667356 |
atcaacaaatcaattatactatccaatattatatgcaatgggaataataaagttctcttgatatacagtcaacacttatacttggttgaaaattttacgg |
17667455 |
T |
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| Q |
112 |
ctttaattttatcaatagttatgagaaaatggc |
144 |
Q |
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| T |
17667456 |
ttttactattgttaatagttatgaaaaaatggc |
17667488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 7773693 - 7773733
Alignment:
| Q |
73 |
tatacaatgcattcttatccttgactgcaaattttactgct |
113 |
Q |
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| T |
7773693 |
tatacaattcattcttattcttgactgcaaatttttctgct |
7773733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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