View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143_low_28 (Length: 243)
Name: NF5143_low_28
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 48706846 - 48706727
Alignment:
| Q |
108 |
taaatatttttgttttgttatccgcacttccttccaagtccaacactcccattttctacaactagatgcaggaaggaatcgcacgtaaatactatatcaa |
207 |
Q |
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| T |
48706846 |
taaatatttttgttttgttaaccgcacttccttccaagtccaacactcccattttctataactatatgcatgaaggaatagcacgtaaattctatatcaa |
48706747 |
T |
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| Q |
208 |
gaagtctttgttcacaaaat |
227 |
Q |
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| T |
48706746 |
gaagtctttgttcacaaaat |
48706727 |
T |
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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 48707623 - 48707561
Alignment:
| Q |
43 |
tatgtgtgaaggtttgtccctcatctacagagcagcatttcaaatgcagtttgtttgtttgaccttaa |
110 |
Q |
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| T |
48707623 |
tatgtgtgaaggtttgtccctcatctacagagcagcatt-----tgcagtttgtttgtttgaccttaa |
48707561 |
T |
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