View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5143_low_29 (Length: 242)
Name: NF5143_low_29
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_low_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 38645204 - 38645434
Alignment:
| Q |
1 |
gtaactccaccacacaattcattctttagagccattgcctgttcatgatttatgatattgaagtcgaggtttgtatgttgctgcaacaatccttgcatgg |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38645204 |
gtaactccaccacacaattcattctctagagccattgcctgttcatgatttatgatattgaagtcgaggtttgtatgttgctgcaacaatccttgcatgg |
38645303 |
T |
|
| Q |
101 |
actcttcttgatcgaagatttcgtctaggattgtatttggatataagtgatattgcgattggtcttgatcaaacaatatttcatctaggattgtgtttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38645304 |
actcttcttgatcgaagatttcgtctaggattgtatttggatataagtgatattgcgattggtcttgatcaaacaatatttcatctaggattgtgtttgg |
38645403 |
T |
|
| Q |
201 |
agataagagatcttctgctgggagtgatgat |
231 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
38645404 |
agataagagatcttctgctgggagtggtgat |
38645434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 38899300 - 38899070
Alignment:
| Q |
1 |
gtaactccaccacacaattcattctttagagccattgcctgttcatgatttatgatattgaagtcgaggtttgtatgttgctgcaacaatccttgcatgg |
100 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38899300 |
gtaactccaccacacaattcatactctagagccattgcctgttcatgatttatgatattgaagtcgaggtttgtatgttgctgcagcaatccttgcatgg |
38899201 |
T |
|
| Q |
101 |
actcttcttgatcgaagatttcgtctaggattgtatttggatataagtgatattgcgattggtcttgatcaaacaatatttcatctaggattgtgtttgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || || ||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38899200 |
actcttcttgatcgaagatttcgtctaggattgtatttggagatgagagatattgtgattggtcttgatcaaacaatatttcatctaggattgtatttgg |
38899101 |
T |
|
| Q |
201 |
agataagagatcttctgctgggagtgatgat |
231 |
Q |
| |
|
| ||||||||||||||||| |||||| |||| |
|
|
| T |
38899100 |
aaataagagatcttctgcttggagtggtgat |
38899070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University