View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143_low_31 (Length: 232)
Name: NF5143_low_31
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_low_31 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 46466444 - 46466221
Alignment:
| Q |
9 |
acaagggcagtacccttaacatattctgtaacagccaaagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgatac |
108 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46466444 |
acaagggcagtacccttaacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgatac |
46466345 |
T |
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| Q |
109 |
cttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccacc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46466344 |
cttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccacc |
46466245 |
T |
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| Q |
209 |
agatatttgatcgaacaaaccctg |
232 |
Q |
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|||||||||||||||||||||||| |
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| T |
46466244 |
agatatttgatcgaacaaaccctg |
46466221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 46471649 - 46471426
Alignment:
| Q |
9 |
acaagggcagtacccttaacatattctgtaacagccaaagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgatac |
108 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46471649 |
acaagggcagtacccttaacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgatac |
46471550 |
T |
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| Q |
109 |
cttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccacc |
208 |
Q |
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| T |
46471549 |
cttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccacc |
46471450 |
T |
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| Q |
209 |
agatatttgatcgaacaaaccctg |
232 |
Q |
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|||||||||||||||||||||||| |
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| T |
46471449 |
agatatttgatcgaacaaaccctg |
46471426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 46452062 - 46451831
Alignment:
| Q |
1 |
tctattaaacaagggcagtacccttaacatattctgtaacagccaaagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgagga |
100 |
Q |
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||||||| ||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| || |
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| T |
46452062 |
tctattacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaaga |
46451963 |
T |
|
| Q |
101 |
catgataccttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggatt |
200 |
Q |
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||| | |||||||||||| ||||||||||||||||||| || ||||||| ||||||||||| || ||||||||||||||| |||||||||||| ||| |
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| T |
46451962 |
cataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaatt |
46451863 |
T |
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| Q |
201 |
ccaccaccagatatttgatcgaacaaaccctg |
232 |
Q |
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|||||||||||||||||||| ||||||||||| |
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| T |
46451862 |
ccaccaccagatatttgatcaaacaaaccctg |
46451831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 46344494 - 46344725
Alignment:
| Q |
1 |
tctattaaacaagggcagtacccttaacatattctgtaacagccaaagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgagga |
100 |
Q |
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||||||| ||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| || |
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| T |
46344494 |
tctattacacaagggaggtacccttaacatactctgtaaaggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaaga |
46344593 |
T |
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| Q |
101 |
catgataccttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggatt |
200 |
Q |
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||| | |||||||||||| ||||||||||||||||||| || ||||||| ||||||||||| || ||||||||||||||| |||||||||||| ||| |
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| T |
46344594 |
cataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaatt |
46344693 |
T |
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| Q |
201 |
ccaccaccagatatttgatcgaacaaaccctg |
232 |
Q |
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|||||||||||||||||||| ||||||||||| |
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| T |
46344694 |
ccaccaccagatatttgatcaaacaaaccctg |
46344725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 46463030 - 46462799
Alignment:
| Q |
1 |
tctattaaacaagggcagtacccttaacatattctgtaacagccaaagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgagga |
100 |
Q |
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||||||| ||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| || |
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| T |
46463030 |
tctattacacaagggaggtacccttaacatactctgtaaaggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaaga |
46462931 |
T |
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| Q |
101 |
catgataccttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggatt |
200 |
Q |
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||| | |||||||||||| ||||||||||||||||||| || ||||||| ||||||||||| || ||||||||||||||| |||||||||||| ||| |
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| T |
46462930 |
cataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaatt |
46462831 |
T |
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| Q |
201 |
ccaccaccagatatttgatcgaacaaaccctg |
232 |
Q |
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|||||||||||||||||||| ||||||||||| |
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| T |
46462830 |
ccaccaccagatatttgatcaaacaaaccctg |
46462799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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