View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5143_low_6 (Length: 534)
Name: NF5143_low_6
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 111 - 519
Target Start/End: Original strand, 8498941 - 8499353
Alignment:
| Q |
111 |
gtagatgaagtctttcaatagtgcaatggattagggtataaaaagagtttggaattgaaggaacgtggaccagatggaaaatgaaatttggatttttaga |
210 |
Q |
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| T |
8498941 |
gtagatgaagtctttcaatagtgcaatggattagggtataaaaagagtttggaattgaaggaacgtggaccagatggaaaatgaaatttggatttttaga |
8499040 |
T |
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| Q |
211 |
aaattccacgatatttattattannnnnnnactatcccaaattgttgcgtaagatggtgcgtcaggttggaaaatgtcacaaatctaaatactacataca |
310 |
Q |
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| T |
8499041 |
aaattccacgatatttattattatttttttactatcccaaattgttgcgtaagatggtgcgtcaggttggaaaatgtcacaaatctaaatactacataca |
8499140 |
T |
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| Q |
311 |
tcctacaaccacacgtccatagtttggcaatcatttaatttacacttgtctttggtaaattaactgtgtgtttct--gtgttactactagctagctagga |
408 |
Q |
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| T |
8499141 |
tcctacaaccacacgtccatagtttggcaatcatttaatttacacttgtctttggtaaattaactgtgtgtttctctgtgttactcctagctagctagga |
8499240 |
T |
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| Q |
409 |
gagtatcctttttctaacaacaaaacaaataaaatctaagtgaaattattaacttcatctttatttgaacaacgtatctgatgtgatatcatatatatat |
508 |
Q |
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| T |
8499241 |
gagtatcctttttctaacaacaaaacaaataaaatctaagggaaattgttaacttcatctttatttcaacaacgtatgtgatgtgatatcgtatatatat |
8499340 |
T |
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| Q |
509 |
tt--attttattt |
519 |
Q |
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| T |
8499341 |
ttttattttattt |
8499353 |
T |
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