View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5143_low_7 (Length: 532)
Name: NF5143_low_7
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 7639640 - 7639980
Alignment:
| Q |
18 |
gttttgaggttaagaaatacta--atattacttatgtccattgacttgtttattaatttatttttatgtagggatctgtgtcgttcatacatcttgaaga |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7639640 |
gttttgaggttaagaaatactataatattacttatgtccattgacttgttcattaatttatttttatgtagggatctgtgtcattcatacatcttgaaga |
7639739 |
T |
|
| Q |
116 |
cgactggccattactttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaacatatccaatttatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7639740 |
cgactggccattactttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaacatatccaatttatt |
7639839 |
T |
|
| Q |
216 |
aattttgttttaaaaaatgccaaagttttagaagagatccggatagtgtgttcgagtgatataacaacttatctcgataatatcagaagccagttgcaag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7639840 |
aattttgttttaaaaaatgccaaagttttagaagagatccggatagtgtgttcgagtgatataacaacttatctcgataatatcagaagccagttgcaag |
7639939 |
T |
|
| Q |
316 |
ctgtatgccccgaaagctgtctcatgacatttcagtagaca |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7639940 |
ctgtatgccccgaaagctgtctcatgacatttcagtagaca |
7639980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 44 - 356
Target Start/End: Original strand, 7632953 - 7633263
Alignment:
| Q |
44 |
tacttatgtccattgacttgtttattaatttatttttatgtagggatctgtgtcgttcatacatcttgaagacgactggccattactttcagtgccttgc |
143 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||| ||||| ||| || ||| ||||| ||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
7632953 |
tactcatgtccattgacttgtttat--atttatttttctgtagcgatttgagtcattcatggatcttgaagacgactggacattactttcagtgccttac |
7633050 |
T |
|
| Q |
144 |
tgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaacatatccaatttattaattttgttttaaaaaatgccaaagttt |
243 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
7633051 |
tgtttcgaatattctctcaaatcattttgcgtttcagattttcttggacttgaacaacatatccaatttattaagtttgttttaaaaaatgccagagttt |
7633150 |
T |
|
| Q |
244 |
tagaagagatccggatagtgtgttcgagtgatataacaacttatctcgataatatcagaagccagttgcaagctgtatgccccgaaagctgtctcatgac |
343 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||| |||| ||| |||||||||| |||||||||| |||||||| |||| |||||||||||||||| |
|
|
| T |
7633151 |
tagaagagatccggatagtgtgttcgagcgacatattaactgatcgagataatatcaaaagccagttggaagctgtagtccccaaaagctgtctcatgac |
7633250 |
T |
|
| Q |
344 |
atttcagtagaca |
356 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
7633251 |
atttctgtagaca |
7633263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 395 - 532
Target Start/End: Original strand, 7640010 - 7640147
Alignment:
| Q |
395 |
aagggattcaatttattcatctaactttattcccaaattaaatggcttcacctagttagaatgccaagactagtttattgagcatagacgacattgtgaa |
494 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7640010 |
aagggattcaaaatattcatctaactttattcccaaattaaatggcttcacctagttagaatgccaagactagtttattgagcatagacgacattgtgaa |
7640109 |
T |
|
| Q |
495 |
tggaatcagtttatatatagatattattgcaaattttg |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7640110 |
tggaatcagtttatatatagatattattgcaaattttg |
7640147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 429 - 523
Target Start/End: Original strand, 7633288 - 7633379
Alignment:
| Q |
429 |
aaattaaatggcttcacctagttagaatgccaagactagtttattgagcatagacgacattgtgaatggaatcagtttatatatagatattattg |
523 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
7633288 |
aaattaaatggcttcacctagttggaatgccaatactagtttatggagcata---cacattctgaatggattcagtttatatatagatattattg |
7633379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 31217585 - 31217525
Alignment:
| Q |
131 |
ttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtgga |
191 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||| | ||||||||||||||||| |
|
|
| T |
31217585 |
ttcactgccttgctgtttcaaatcttctctcaaatcatgtgatatttcagattttcgtgga |
31217525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 31267847 - 31267815
Alignment:
| Q |
131 |
ttcagtgccttgctgtttcaaatattctctcaa |
163 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
31267847 |
ttcagtgccttgctgtttcaaatcttctctcaa |
31267815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University