View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5143_low_9 (Length: 440)
Name: NF5143_low_9
Description: NF5143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5143_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 8 - 422
Target Start/End: Complemental strand, 16232710 - 16232293
Alignment:
| Q |
8 |
tgagatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16232710 |
tgagatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagttt |
16232611 |
T |
|
| Q |
108 |
gagacaaccaagtactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16232610 |
gagacaaccaagtactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcatcgggacctccgaagctgactgtgct |
16232511 |
T |
|
| Q |
208 |
gttctagtcatcaattccactactctcagtttgcaagctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtga |
307 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16232510 |
gttctagtcatcaattccactactctcggtttgcaagctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtga |
16232411 |
T |
|
| Q |
308 |
ggcaaatgatctg---ctgcaacaaggtattgacattttcagcatctgattattatttttataattcatttatataagtaataattattaacatctatct |
404 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16232410 |
ggcaaatgatctgctgctgcaacaaggtattgacattttcagcatctgattattatttttataattcatttatataagtaataattattaacatctatct |
16232311 |
T |
|
| Q |
405 |
tcacagatggatgccact |
422 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
16232310 |
tcacagatgaatgccact |
16232293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 420
Target Start/End: Complemental strand, 34691361 - 34690954
Alignment:
| Q |
8 |
tgagatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagttt |
107 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
34691361 |
tgagatgaagaagcgttcattcaagtatgcttgggtgcttgacaagctcaacgctgagcgtgaaagaggtatcacaattgacatttc--tatgcaagttt |
34691264 |
T |
|
| Q |
108 |
gagacaaccaagtactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgct |
207 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34691263 |
gagacaaccaagtactgcttcactctcattgatgctcccggacacagggatttc----attaagaacatgatcaccgggacctcccaagctgactgtgct |
34691168 |
T |
|
| Q |
208 |
gttctagtcatcaattccactactctcagtttgcaagctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtga |
307 |
Q |
| |
|
||||| ||||| |||| |||||| |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| | |||||||||||||| |
|
|
| T |
34691167 |
gttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagacctgggaacatgctcttcttgccttcactcttggtgtga |
34691068 |
T |
|
| Q |
308 |
ggcaaatgat---ctgctgcaacaaggtattgaca-ttttcagcatctgattattatttttataattcatttatataagtaataattattaacatctatc |
403 |
Q |
| |
|
|||||||||| |||||||||||||||||| | | |||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34691067 |
ggcaaatgatctgctgctgcaacaaggtatttatatttttcagcatttg---attatttttataattcatttatataagtattaattattaacatctatc |
34690971 |
T |
|
| Q |
404 |
ttcacagatggatgcca |
420 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
34690970 |
ttcgcagatggatgcca |
34690954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 420
Target Start/End: Complemental strand, 34713773 - 34713366
Alignment:
| Q |
8 |
tgagatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagttt |
107 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
34713773 |
tgagatgaagaagcgttcattcaagtatgcttgggtgcttgacaagctcaacgctgagcgtgaaagaggtatcacaattgacatttc--tatgcaagttt |
34713676 |
T |
|
| Q |
108 |
gagacaaccaagtactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgct |
207 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34713675 |
gagacaaccaagtactgcttcactctcattgatgctcccggacacagggatttc----attaagaacatgatcaccgggacctcccaagctgactgtgct |
34713580 |
T |
|
| Q |
208 |
gttctagtcatcaattccactactctcagtttgcaagctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtga |
307 |
Q |
| |
|
||||| ||||| |||| |||||| |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| | |||||||||||||| |
|
|
| T |
34713579 |
gttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagacctgggaacatgctcttcttgccttcactcttggtgtga |
34713480 |
T |
|
| Q |
308 |
ggcaaatgat---ctgctgcaacaaggtattgaca-ttttcagcatctgattattatttttataattcatttatataagtaataattattaacatctatc |
403 |
Q |
| |
|
|||||||||| |||||||||||||||||| | | |||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34713479 |
ggcaaatgatctgctgctgcaacaaggtatttatatttttcagcatttg---attatttttataattcatttatataagtattaattattaacatctatc |
34713383 |
T |
|
| Q |
404 |
ttcacagatggatgcca |
420 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
34713382 |
ttcgcagatggatgcca |
34713366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 33861361 - 33861221
Alignment:
| Q |
22 |
gttcattcaagtatgct---tgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagtttgagacaaccaa |
118 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| | |||||| |||| ||| | || |||||||||| | | |
|
|
| T |
33861361 |
gttcattcaagtatgctaattgggttcttgacaagctcgaggctgagcgtgaaagaggtatctccattgacgtttctatgcgtaattttgagacaaacca |
33861262 |
T |
|
| Q |
119 |
gtactgttgcaccctcattgatgcccccggacacagggatt |
159 |
Q |
| |
|
|||| | | ||| ||||||||||||| ||||||||||||| |
|
|
| T |
33861261 |
gtaccggtacactgtcattgatgcccctggacacagggatt |
33861221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 33861131 - 33861059
Alignment:
| Q |
253 |
tctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgctgca |
325 |
Q |
| |
|
|||||| ||||||||||| | |||||||| || || || | ||||||||||||| |||||||||||||||| |
|
|
| T |
33861131 |
tctaagcatggtcagacccgtgaacatgcccttctcgcctgcactcttggtgtgcctcaaatgatctgctgca |
33861059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 45993253 - 45993567
Alignment:
| Q |
20 |
gcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagtttgagacaaccaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||| |
|
|
| T |
45993253 |
gcgttcattcaagtatgcttgggtgcttgacaagctcaagactgagcgtgaaagaggtatcacaattgacagttctttgtcgaagtttgagacaaacaag |
45993352 |
T |
|
| Q |
120 |
tactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttctagtcatc |
219 |
Q |
| |
|
||| | ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||||||||||| |||| |
|
|
| T |
45993353 |
tacagctgcactgtcattgatgcctccggacacagggatttc----attaagaacatgatcaccgggacgtcccaagctgattgtgctgttctcatcatt |
45993448 |
T |
|
| Q |
220 |
aattccactactctcagtttgcaagctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatc- |
318 |
Q |
| |
|
|||||||||||| |||| |||| ||| || |||||||||||||| | ||||||||||| ||||| | |||||||||||||| ||||||||| |
|
|
| T |
45993449 |
gattccactactcgtggttttgaagccggtatttcaaaggatggtcagactcgtgaacatgctcttcttgccttcactcttggtgtgaatcaaatgatct |
45993548 |
T |
|
| Q |
319 |
--tgctgcaacaaggtatt |
335 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
45993549 |
gttgctgcaacaaggtatt |
45993567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 27 - 345
Target Start/End: Original strand, 38137628 - 38137945
Alignment:
| Q |
27 |
ttcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagtttgagacaaccaagtactgtt |
126 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||| |||||||||| | |
|
|
| T |
38137628 |
ttcaagtatgcttgggtgctcgacaagctcaaggccgagcgtgaaagaggtatcactattgacatttctctgtcaaagtttgagactaccaagtactact |
38137727 |
T |
|
| Q |
127 |
gcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttctagtcatcaattcca |
226 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
38137728 |
gcactctcattgatgcccccggacacagggatttc----attaagaacatgattaccgggacgtcccaagctgactgtgctgttctcgtcattgattcca |
38137823 |
T |
|
| Q |
227 |
ctactctcagtttgcaagctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgat---ctgctg |
323 |
Q |
| |
|
| ||| ||||| ||||||||| ||| |||| |||||||||| ||||||||||| ||||| | | |||||||||| | |||||||| |||||| |
|
|
| T |
38137824 |
caactggtagttttgaagctggttattctcaggaaggtcagacctctgaacatgctcttcttgcattcgttcttggtgtgcgccaaatgatctgctgctg |
38137923 |
T |
|
| Q |
324 |
caacaaggtattgacattttca |
345 |
Q |
| |
|
|||||||||||| | ||||||| |
|
|
| T |
38137924 |
caacaaggtatttatattttca |
38137945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 43045530 - 43045204
Alignment:
| Q |
8 |
tgagatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagttt |
107 |
Q |
| |
|
||||||||| | |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| | | || |||||| |
|
|
| T |
43045530 |
tgagatgaacaagcgttcattcaagtatgcctgggtccttgacaagctcaaggctgaacgtgaaagaggtatcaccattgacattgctctctggaagttt |
43045431 |
T |
|
| Q |
108 |
gagacaaccaagtactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgct |
207 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| || ||| ||||||| ||||| |
|
|
| T |
43045430 |
gagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttca----ttaagaacatgatcaccggaacatcccaagctgattgtgcc |
43045335 |
T |
|
| Q |
208 |
gttctagtcatcaattccactactctcagtttgcaagctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtga |
307 |
Q |
| |
|
||||| |||| ||||||||||| |||| |||| ||| |||||||||||||||||| | ||||||||||| ||||| | |||||||||||||| |
|
|
| T |
43045334 |
gttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagacccgtgaacatgctctccttgctttcactcttggtgtga |
43045235 |
T |
|
| Q |
308 |
ggcaaatgatctgc---tgcaacaaggtatt |
335 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
43045234 |
agcaaatgatctgctgttgcaacaaggtatt |
43045204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 43045983 - 43045657
Alignment:
| Q |
8 |
tgagatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagttt |
107 |
Q |
| |
|
||||||||| | |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| | | || |||||| |
|
|
| T |
43045983 |
tgagatgaacaagcgttcattcaagtatgcctgggtccttgacaagctcaaggctgaacgtgaaagaggtatcaccattgacattgctctctggaagttt |
43045884 |
T |
|
| Q |
108 |
gagacaaccaagtactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgct |
207 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| || ||| ||||||| ||||| |
|
|
| T |
43045883 |
gagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttca----ttaagaacatgatcaccggaacatcccaagctgattgtgcc |
43045788 |
T |
|
| Q |
208 |
gttctagtcatcaattccactactctcagtttgcaagctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtga |
307 |
Q |
| |
|
||||| |||| ||||||||||| |||| |||| ||| |||||||||||||||||| | ||||||||||| ||||| | |||||||||||||| |
|
|
| T |
43045787 |
gttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagacccgtgaacatgctctccttgctttcactcttggtgtga |
43045688 |
T |
|
| Q |
308 |
ggcaaatgatctgc---tgcaacaaggtatt |
335 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
43045687 |
agcaaatgatctgctgttgcaacaaggtatt |
43045657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 43066424 - 43066750
Alignment:
| Q |
8 |
tgagatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagttt |
107 |
Q |
| |
|
||||||||| | |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| | | || |||||| |
|
|
| T |
43066424 |
tgagatgaacaagcgttcattcaagtatgcctgggttcttgacaagctcaaggctgaacgtgaaagaggtatcaccattgacattgctctctggaagttt |
43066523 |
T |
|
| Q |
108 |
gagacaaccaagtactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgct |
207 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| || ||| ||||||| ||||| |
|
|
| T |
43066524 |
gagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttc----attaagaacatgatcaccggaacatcccaagctgattgtgcc |
43066619 |
T |
|
| Q |
208 |
gttctagtcatcaattccactactctcagtttgcaagctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtga |
307 |
Q |
| |
|
||||| |||| ||||||||||| |||| |||| ||| |||||||||||||||||| | ||||||||||| ||||| | |||||||||||||| |
|
|
| T |
43066620 |
gttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagacccgtgaacatgctctccttgctttcactcttggtgtga |
43066719 |
T |
|
| Q |
308 |
ggcaaatgatctgc---tgcaacaaggtatt |
335 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
43066720 |
agcaaatgatctgctgttgcaacaaggtatt |
43066750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 43084411 - 43084085
Alignment:
| Q |
8 |
tgagatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagttt |
107 |
Q |
| |
|
||||||||| | |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| | | || |||||| |
|
|
| T |
43084411 |
tgagatgaacaagcgttcattcaagtatgcctgggtccttgacaagctcaaggctgaacgtgaaagaggtatcaccattgacattgctctctggaagttt |
43084312 |
T |
|
| Q |
108 |
gagacaaccaagtactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgct |
207 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| || ||| ||||||| ||||| |
|
|
| T |
43084311 |
gagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttca----ttaagaacatgatcaccggaacatcccaagctgattgtgcc |
43084216 |
T |
|
| Q |
208 |
gttctagtcatcaattccactactctcagtttgcaagctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtga |
307 |
Q |
| |
|
||||| |||| ||||||||||| |||| |||| ||| |||||||||||||||||| | ||||||||||| ||||| | |||||||||||||| |
|
|
| T |
43084215 |
gttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagacccgtgaacatgctctccttgctttcactcttggtgtga |
43084116 |
T |
|
| Q |
308 |
ggcaaatgatctgc---tgcaacaaggtatt |
335 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
43084115 |
agcaaatgatctgctgttgcaacaaggtatt |
43084085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 10 - 392
Target Start/End: Original strand, 45983463 - 45983849
Alignment:
| Q |
10 |
agatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagtttga |
109 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||| || ||| |||||||| |
|
|
| T |
45983463 |
agatgaacaagcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgaacgtgaaagaggtgttacaattgacattaccctgtcgaagtttga |
45983562 |
T |
|
| Q |
110 |
gacaaccaagtactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgt |
209 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
45983563 |
gacaaacaagtacaactgcactgtcattgatgcccccggacacagggatttcattaa----gaacatgatcaccggaacgtcccaagctgactgtgctgt |
45983658 |
T |
|
| Q |
210 |
tctagtcatcaattccactactctcagtttgcaagctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgagg |
309 |
Q |
| |
|
||| ||||| ||||||||||| |||| |||| ||| | | ||||||||||| | ||||||||||| ||||| | |||||||||||||| |
|
|
| T |
45983659 |
tctcgtcattgattccactactggtggttttgaagccggt------atgaatggtcagacccgtgaacatgctcttcttgccttcactcttggtgtgaat |
45983752 |
T |
|
| Q |
310 |
caaatgatctgctgc---aacaaggtattgacattttcagcatct----gatt-------attatttttataattcatttatataagtaataattat |
392 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||| || || |||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45983753 |
caaatgatctgctgctgcaacaaggtatttatattttccgcccctttaagattgtatttgattatttttataattcatttatataagtactaattat |
45983849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 7890793 - 7890993
Alignment:
| Q |
8 |
tgagatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagttt |
107 |
Q |
| |
|
||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
7890793 |
tgagatgaacaggcattcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctgtggaagttt |
7890892 |
T |
|
| Q |
108 |
gagacaaccaagtactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgct |
207 |
Q |
| |
|
||||||||||| | | | ||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| || | |||||||||||||||||| |
|
|
| T |
7890893 |
gagacaaccaacttccgctgcactctcattgatgcccctggacacagggatttc----attaagaacatgatcactggagcgtccgaagctgactgtgct |
7890988 |
T |
|
| Q |
208 |
gttct |
212 |
Q |
| |
|
||||| |
|
|
| T |
7890989 |
gttct |
7890993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 3301266 - 3300941
Alignment:
| Q |
8 |
tgagatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagttt |
107 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||| |
|
|
| T |
3301266 |
tgagatgaacaagcgttcattcaagtatgcttgggtgctcgacaagctcaaggctgaatgtgaaagaggtatcacaattgacattgctctgtggaagttt |
3301167 |
T |
|
| Q |
108 |
gagacaaccaagtactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgct |
207 |
Q |
| |
|
||||| || ||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||| || || || ||| ||||||| |||||| |
|
|
| T |
3301166 |
gagactactaagtactactgcactgtcattgatgcccccggacacagggatttca----ttaagaacatgattactggaacatcccaagctgattgtgct |
3301071 |
T |
|
| Q |
208 |
gttctagtcatcaattccactactctcagtttgcaagctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtga |
307 |
Q |
| |
|
||||| |||| |||||||||| |||| |||| ||| || |||||||| |||||| | ||||| ||||| ||||| | |||||||||||||| |
|
|
| T |
3301070 |
gttctgatcattgattccactaccggtggttttgaagccggtatatcaaaggatgggcagacccgtgaacacgctcttcttgctttcactcttggtgtga |
3300971 |
T |
|
| Q |
308 |
ggcaaatga--tctgctgcaacaaggtatt |
335 |
Q |
| |
|
|||||||| | ||||||||||||||||| |
|
|
| T |
3300970 |
agcaaatgatttttgctgcaacaaggtatt |
3300941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 7888541 - 7888728
Alignment:
| Q |
21 |
cgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagtttgagacaaccaagt |
120 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || |||||| ||||||||| | |
|
|
| T |
7888541 |
cgtttattcaagtatgcttgggtgcttgacaaactcaaggctgagcgtgaaagaggtatcacaattgacatttctctttggaagtttcagacaaccagct |
7888640 |
T |
|
| Q |
121 |
actgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttct |
212 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||| || |||||||||||||||||| | || |||||||| ||||||||||| |
|
|
| T |
7888641 |
actgctgcactctcattgatgcccccggacacagggatttc----atcaagaacatgatcaccggggcgtctgaagctgattgtgctgttct |
7888728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 51292151 - 51291885
Alignment:
| Q |
8 |
tgagatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagttt |
107 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | ||||||| |
|
|
| T |
51292151 |
tgagatgaacatgcgttcattcacgtatgcttgggtgcttgacaagttcaaggctgagcgtgaaagaggtatcacaattgacatttctctatccaagttt |
51292052 |
T |
|
| Q |
108 |
gagacaaccaagtactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgct |
207 |
Q |
| |
|
|| |||| |||||||| |||||| |||||||||||||||||||| || ||||| ||||||||||||||| ||||| | | | |||||||||||| | |
|
|
| T |
51292051 |
ga-acaatcaagtactattgcactctcattgatgcccccggacatgggaatttc----attaagaacatgatcgccgggccgttccaagctgactgtgtt |
51291957 |
T |
|
| Q |
208 |
gttctagtcatcaattccactactctcagtttgcaagctggttggtctaaggatggtcagacctgggaacat |
279 |
Q |
| |
|
|||| || | ||||||| ||| | | || ||||||||| |||||||||||||||||| | |||||| |
|
|
| T |
51291956 |
attctcatccttgattccacaactggcgggtttgaagctggttattctaaggatggtcagaccggtgaacat |
51291885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 40034449 - 40034647
Alignment:
| Q |
8 |
tgagatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagttt |
107 |
Q |
| |
|
||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| |||||||||| ||||||| |
|
|
| T |
40034449 |
tgagatgaacaagcgctcattcaagtatgcttgggtacttgacaagctcaaggctgagcgtgaaagaggtgttacaattgatatttccatgtccaagttt |
40034548 |
T |
|
| Q |
108 |
gagacaaccaagtactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgct |
207 |
Q |
| |
|
||||||||||| ||| ||||| |||||||| ||||||||||||| |||||| || ||||||||| | ||||| || ||| ||||||||||||| |
|
|
| T |
40034549 |
gagacaaccaaataccactgcactctcattgacgcccccggacaca--gatttc----atcaagaacatgttaaccggcacgtccctagctgactgtgct |
40034642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 43076553 - 43076737
Alignment:
| Q |
23 |
ttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagtttgagacaaccaagtac |
122 |
Q |
| |
|
|||| |||||||||| ||| | ||||||||||||| |||||| |||||||||||||| || ||||| ||||| | || |||||||||||||| ||| || |
|
|
| T |
43076553 |
ttcagtcaagtatgcctggatccttgacaagctcagggctgaacgtgaaagaggtat-accattgagatttctctctggaagtttgagacaacaaagaac |
43076651 |
T |
|
| Q |
123 |
tgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttct |
212 |
Q |
| |
|
|| ||| ||||||||| ||| ||||||| | ||||| ||||||||||||||||| ||||| ||| ||||||| |||||| |||| |
|
|
| T |
43076652 |
tgctgcgttgtcattgatgtcccgggacacaagaatttc----attaagaacatgatcactgggacgtcccaagctgattgtgctcttct |
43076737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 335
Target Start/End: Original strand, 40034689 - 40034767
Alignment:
| Q |
260 |
atggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgc---tgcaacaaggtatt |
335 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || ||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
40034689 |
atggtcagaccactgaacatgctcttcttgcctatactcttggtgtgaatcaaatgatctgctgctgcaacaaggtatt |
40034767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 43066782 - 43066818
Alignment:
| Q |
354 |
ttattatttttataattcatttatataagtaataatt |
390 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
43066782 |
ttattatttttataattcatttatttaagtactaatt |
43066818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 43084053 - 43084017
Alignment:
| Q |
354 |
ttattatttttataattcatttatataagtaataatt |
390 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
43084053 |
ttattatttttataattcatttatttaagtactaatt |
43084017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 8 - 324
Target Start/End: Complemental strand, 4232003 - 4231691
Alignment:
| Q |
8 |
tgagatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagttt |
107 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| |
|
|
| T |
4232003 |
tgagatgaacaagcgttcatttaagtatgcttgggttcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacattgctctgtggaagttt |
4231904 |
T |
|
| Q |
108 |
gagacaaccaagtactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgct |
207 |
Q |
| |
|
||||| || ||||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||||| || || || ||| ||||||| |||||| |
|
|
| T |
4231903 |
gagaccactaagtactactgcactgtcattgatgcccctggacacagggatttca----ttaagaacatgattactggtacatcccaagctgattgtgct |
4231808 |
T |
|
| Q |
208 |
gttctagtcatcaattccactactctcagtttgcaagctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtga |
307 |
Q |
| |
|
||||| |||| ||||||| ||| |||| |||||||| || |||||||||||||| | ||||||||||| ||||| | |||||||||||||| |
|
|
| T |
4231807 |
gttctcatcattgattccaccactggtggttttgaagctggtatttccaaggatggtcagactcgtgaacatgctctccttgctttcactcttggtgtga |
4231708 |
T |
|
| Q |
308 |
ggcaaatgatctgctgc |
324 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4231707 |
ggcaaatgatctgctgc |
4231691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 4620226 - 4620026
Alignment:
| Q |
8 |
tgagatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagttt |
107 |
Q |
| |
|
|||||| || ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
4620226 |
tgagataaacatgtgttcattcaaatatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaatcgacatttctctgtccaagttt |
4620127 |
T |
|
| Q |
108 |
gagacaaccaagtactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgct |
207 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
4620126 |
gagacaaccaagtactactgcactctcattgatgcccccggacacagagatttca----ttaagaacatgatcaccggaacatcccaagctgactgtgct |
4620031 |
T |
|
| Q |
208 |
gttct |
212 |
Q |
| |
|
||||| |
|
|
| T |
4620030 |
gttct |
4620026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 1846916 - 1846728
Alignment:
| Q |
20 |
gcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagtttgagacaaccaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | || ||||||||||||||||| |
|
|
| T |
1846916 |
gcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctatggaagtttgagacaaccaac |
1846817 |
T |
|
| Q |
120 |
tactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttct |
212 |
Q |
| |
|
| | ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
1846816 |
ttcctctgcactctcattgatgcccccggacacagggatttc----attaagaacatgatcaccggagcatccgaagctgactgtgccgttct |
1846728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 4787274 - 4787408
Alignment:
| Q |
23 |
ttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagtttgagacaaccaagtac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
4787274 |
ttcattcaagtatgcttgggtgcttgacaaactcaagggtgagcgtgaaagaggtgccacaattgacatttctatgtccaagtttgagacaaacaagtac |
4787373 |
T |
|
| Q |
123 |
tgttgcaccctcattgatgcccccggacacaggga |
157 |
Q |
| |
|
||||| |||||||||| |||||||||||||| |
|
|
| T |
4787374 |
aactgcactgtcattgatgctcccggacacaggga |
4787408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 4297999 - 4297851
Alignment:
| Q |
18 |
atgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagtttgagacaacca |
117 |
Q |
| |
|
|||| ||| ||||||||||||||||| |||||||| ||||| ||||| | |||||||||| ||||||||||||||| ||| |||||||||||||| || |
|
|
| T |
4297999 |
atgccttcgttcaagtatgcttgggtacttgacaaactcaaagctgaccatgaaagaggtgccacaattgacatttctctgtccaagtttgagacaaaca |
4297900 |
T |
|
| Q |
118 |
agtactgttgcaccctcattgatgcccccggacacagggatttcattaa |
166 |
Q |
| |
|
||||| |||| ||||||||||||||||||| ||||| | |||||| |
|
|
| T |
4297899 |
agtacaactgcattgtcattgatgcccccggacatagggaatgcattaa |
4297851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 422
Target Start/End: Complemental strand, 4297654 - 4297588
Alignment:
| Q |
356 |
attatttttataattcatttatataagtaataattattaacatctatcttcacagatggatgccact |
422 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
4297654 |
attatttttataattcatttgtataaatactaattatcatcatctatcttcacagatggatgccact |
4297588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 423
Target Start/End: Complemental strand, 4619861 - 4619794
Alignment:
| Q |
353 |
attattatttttataattcatttatataagtaataattattaacatctatcttcacagatggatgccactg |
423 |
Q |
| |
|
|||||||||||||| |||||||||||||| || ||||| | |||||||||| | ||||||||||||||| |
|
|
| T |
4619861 |
attattatttttattattcatttatataattactaatttt---catctatcttgatagatggatgccactg |
4619794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 335
Target Start/End: Original strand, 4787457 - 4787535
Alignment:
| Q |
260 |
atggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgc---tgcaacaaggtatt |
335 |
Q |
| |
|
||||||||||| ||||||||||| ||||| | |||| ||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
4787457 |
atggtcagacccttgaacatgctcttcttgccttcactgttggtgtgaagcaaatgatctgctgctgcaacaaggtatt |
4787535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 27 - 212
Target Start/End: Complemental strand, 16349656 - 16349475
Alignment:
| Q |
27 |
ttcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagtttgagacaaccaagtactgtt |
126 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||| ||| |||| || |||||||||||||||||| | | |
|
|
| T |
16349656 |
ttcaagtatgcgtgggttcttgacaaactcaaggctgagcgcgaaagaggtatcacaattgacaattctatgttgaattttgagacaaccaagtaccgct |
16349557 |
T |
|
| Q |
127 |
gcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttct |
212 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||| ||||||| |||||| |||| |
|
|
| T |
16349556 |
gcactatcattgatgcccccggacacagggatttca----ttaagaacatgattactgggacatcccaagctgattgtgctcttct |
16349475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 347
Target Start/End: Complemental strand, 16349427 - 16349337
Alignment:
| Q |
260 |
atggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctg---ctgcaacaaggtattgacattttcagc |
347 |
Q |
| |
|
||||||||| | | ||||||||||| | ||| ||| |||||||||| | |||||||||||| ||||||||||||||| | ||||||||| |
|
|
| T |
16349427 |
atggtcagatccgtgaacatgctctccatgcttactctcttggtgtcaagcaaatgatctgctgctgcaacaaggtattcatattttcagc |
16349337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 7528839 - 7528982
Alignment:
| Q |
8 |
tgagatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagttt |
107 |
Q |
| |
|
||||||||| | |||||||||||||||||| ||||| |||||||| || |||||||||||||||||||| || || || || ||| || |||| || ||| |
|
|
| T |
7528839 |
tgagatgaacaagcgttcattcaagtatgcatgggttcttgacaaacttaaggctgagcgtgaaagaggaattaccatcgatattgccttgtggaaattt |
7528938 |
T |
|
| Q |
108 |
gagacaaccaagtactgttgcaccctcattgatgcccccggaca |
151 |
Q |
| |
|
||||| |||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
7528939 |
gagaccaccaagtactactgcacagtcattgatgctcccggaca |
7528982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 320
Target Start/End: Original strand, 7519487 - 7519776
Alignment:
| Q |
27 |
ttcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagtttgagacaaccaagtactgtt |
126 |
Q |
| |
|
|||||||| || ||||| ||||||||||| |||||||||||||||||||| || || ||||| ||| | |||| || |||||||| |||||||||| | |
|
|
| T |
7519487 |
ttcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgctttgtggaaatttgagaccaccaagtactact |
7519586 |
T |
|
| Q |
127 |
gcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttctagtcatcaattcca |
226 |
Q |
| |
|
|||| |||||||||| |||||||| | |||||| || ||||||||||| || || |||||| | ||||| |||||||| || |||| | |||| |
|
|
| T |
7519587 |
gcacagtcattgatgctcccggacatcgtgatttc----atcaagaacatgattactggaacctcccaggctgattgtgctgtccttatcattgactcca |
7519682 |
T |
|
| Q |
227 |
ctactctcagtttgcaagctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctg |
320 |
Q |
| |
|
| ||| |||| |||||||| ||||||||||| |||||| | || |||||||| ||||| | |||||||| |||| ||| |||||||| |
|
|
| T |
7519683 |
ccactggtggttttgaagctggtatctctaaggatggacagacccgtgagcatgctcttcttgcatttactcttggagtgaagcagatgatctg |
7519776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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