View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5144_high_1 (Length: 359)
Name: NF5144_high_1
Description: NF5144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5144_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 37091947 - 37092278
Alignment:
| Q |
17 |
caaagaacaagaaaatataatttgttagttaaacttctcttaataaaacttgtttattatctgcatccgtttgagttaactccccttctgaatattcatc |
116 |
Q |
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| T |
37091947 |
caaagaacaagaaaatataatttgttagttaaacttctcttaataaaacttgtttattatctgcatccgtttgagttaactccccttctgaatattcatc |
37092046 |
T |
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| Q |
117 |
cacatataagttggtttggacaatggaattgtgaaaggttagtttatactttttgttttaatttcatttttcttctaactttccactttccacaactatt |
216 |
Q |
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| T |
37092047 |
cacatataagttggtttggacaatggaattgtgaaaggttagtttatactttatgttttaatttcatttttcttctaactttccactttccacaattatt |
37092146 |
T |
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| Q |
217 |
aaatgtataaacttgtgaattgtgatgatattttgtcacgttctaattgttttcatgcaggtgttag--nnnnnnnnattcatttggtaaacatttctac |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37092147 |
aaatgtataaacttgtgaattgtgatgatattttgtcacgttctaattgttttcatgcaggtgttagtttttttatcattcatttggtaaacatttctac |
37092246 |
T |
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| Q |
315 |
aaagaagacgtgaaattttgaaaacaatatga |
346 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
37092247 |
aaagaagacgtgaaattttgaaaacaatatga |
37092278 |
T |
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