View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5144_low_3 (Length: 249)

Name: NF5144_low_3
Description: NF5144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5144_low_3
NF5144_low_3
[»] chr6 (6 HSPs)
chr6 (4-126)||(23252853-23252975)
chr6 (26-87)||(2725846-2725907)
chr6 (17-88)||(28992467-28992538)
chr6 (22-87)||(2146731-2146795)
chr6 (22-87)||(3607053-3607117)
chr6 (31-87)||(33699309-33699365)
[»] chr4 (7 HSPs)
chr4 (20-86)||(52450176-52450242)
chr4 (22-88)||(56210983-56211047)
chr4 (31-88)||(29405136-29405193)
chr4 (31-82)||(24393619-24393670)
chr4 (13-59)||(959074-959120)
chr4 (20-60)||(43635734-43635774)
chr4 (23-63)||(50197862-50197902)
[»] chr5 (6 HSPs)
chr5 (20-87)||(32303607-32303674)
chr5 (20-88)||(9828179-9828246)
chr5 (71-123)||(32303689-32303741)
chr5 (22-86)||(37442611-37442674)
chr5 (19-88)||(32827076-32827144)
chr5 (24-92)||(34594659-34594726)
[»] chr8 (6 HSPs)
chr8 (17-87)||(33102107-33102177)
chr8 (43-88)||(7913311-7913356)
chr8 (20-87)||(12750154-12750221)
chr8 (20-87)||(22842147-22842214)
chr8 (35-92)||(34072929-34072986)
chr8 (75-123)||(12750272-12750320)
[»] chr1 (4 HSPs)
chr1 (19-85)||(622946-623012)
chr1 (44-86)||(10369486-10369528)
chr1 (26-87)||(21322571-21322632)
chr1 (44-87)||(52186914-52186957)
[»] chr3 (3 HSPs)
chr3 (31-88)||(20991562-20991619)
chr3 (32-88)||(35310431-35310487)
chr3 (44-88)||(54019107-54019151)
[»] chr2 (3 HSPs)
chr2 (44-86)||(6620026-6620068)
chr2 (19-87)||(39556020-39556087)
chr2 (22-87)||(13387318-13387383)
[»] scaffold0254 (1 HSPs)
scaffold0254 (22-87)||(23192-23256)
[»] chr7 (2 HSPs)
chr7 (22-85)||(3756376-3756439)
chr7 (20-86)||(33818957-33819023)


Alignment Details
Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 23252975 - 23252853
Alignment:
Q  4 atgtcgaagaatatatgataattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcacatagggcgataatgag 103  Q
    ||||| || ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| || |  ||||||    
T  23252975 atgtccaataatatatgataattgcttttctcccatctggttttgctcattcccgtcaaaatagccgagcgtgagttaactcacatatggagggaatgag 23252876  T
Q  104 caaaagcagatgggagaagaaca 126  Q
    |||||||||||||||||||||||    
T  23252875 caaaagcagatgggagaagaaca 23252853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 2725907 - 2725846
Alignment:
Q  26 tgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcac 87  Q
    |||| |||||||||||  ||||||||||| ||||||||||||| ||||||||||||||||||    
T  2725907 tgctcttctcccatctgtttttgctcattcccgtcaaaatagccgagcgtgagttaactcac 2725846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 28992538 - 28992467
Alignment:
Q  17 tatgataattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcaca 88  Q
    |||||||||| || ||||||||||| |||||||||||| |||| |||||||  || ||||| ||||||||||    
T  28992538 tatgataatttctcttctcccatctggttttgctcattcccgttaaaatagacgatcgtgatttaactcaca 28992467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 2146731 - 2146795
Alignment:
Q  22 taattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcac 87  Q
    |||||||| |||||||||||  ||||||| ||||||||| ||||||| |||||||||| |||||||    
T  2146731 taattgctcttctcccatctatttttgcttatttccgtc-aaatagcagagcgtgagtgaactcac 2146795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 3607117 - 3607053
Alignment:
Q  22 taattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcac 87  Q
    |||||||| |||||||||||  |||||||||||| ||| ||||||| ||||||||| || ||||||    
T  3607117 taattgctcttctcccatctatttttgctcattttcgt-aaaatagttgagcgtgaattgactcac 3607053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 33699309 - 33699365
Alignment:
Q  31 ttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcac 87  Q
    |||||| ||||  |||||||  || |||||||||||| |||||||||||||||||||    
T  33699309 ttctccaatctgtttttgcttgttcccgtcaaaataggtgagcgtgagttaactcac 33699365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 52450242 - 52450176
Alignment:
Q  20 gataattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactca 86  Q
    |||||||||||| |||||||||  |||| |||||| ||||||||||||| |||||||||||||||||    
T  52450242 gataattgctttcctcccatctgtttttactcattcccgtcaaaatagccgagcgtgagttaactca 52450176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 56211047 - 56210983
Alignment:
Q  22 taattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcaca 88  Q
    |||||||| ||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||    
T  56211047 taattgctcttctctcatat-gttttgctcatttccgtcaaaatagctga-cgtgagttaactcaca 56210983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 29405193 - 29405136
Alignment:
Q  31 ttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcaca 88  Q
    ||||||||| |  ||||| ||||||||||||||||||| |||||||||| ||||||||    
T  29405193 ttctcccatatgattttgttcatttccgtcaaaatagccgagcgtgagtgaactcaca 29405136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 24393619 - 24393670
Alignment:
Q  31 ttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaa 82  Q
    |||||||||||  ||||||||||| || ||||||||| ||||||||||||||    
T  24393619 ttctcccatctgtttttgctcattcccatcaaaatagttgagcgtgagttaa 24393670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 959074 - 959120
Alignment:
Q  13 aatatatgataattgcttttctcccatctcgttttgctcatttccgt 59  Q
    |||||| |||||||||| |||||||||||  ||||||||||||||||    
T  959074 aatataagataattgctcttctcccatctatttttgctcatttccgt 959120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 43635734 - 43635774
Alignment:
Q  20 gataattgcttttctcccatctcgttttgctcatttccgtc 60  Q
    |||||||||| |||||||||||  |||||||||||||||||    
T  43635734 gataattgctcttctcccatctatttttgctcatttccgtc 43635774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 50197902 - 50197862
Alignment:
Q  23 aattgcttttctcccatctcgttttgctcatttccgtcaaa 63  Q
    ||||||| |||||||||||| ||||| ||||||||||||||    
T  50197902 aattgctcttctcccatctctttttgttcatttccgtcaaa 50197862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 32303607 - 32303674
Alignment:
Q  20 gataattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcac 87  Q
    |||||||||| |||| ||||||  |||||||||||| |||||||||||  ||||||||||||||||||    
T  32303607 gataattgctcttcttccatctgattttgctcattttcgtcaaaatagtcgagcgtgagttaactcac 32303674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 9828179 - 9828246
Alignment:
Q  20 gataattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcaca 88  Q
    |||||||||| ||||||||||| |||||||||||| ||||| ||||||  |||||||||||||| ||||    
T  9828179 gataattgctcttctcccatctggttttgctcattcccgtc-aaatagtagagcgtgagttaacccaca 9828246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 32303689 - 32303741
Alignment:
Q  71 agcgtgagttaactcacatagggcgataatgagcaaaagcagatgggagaaga 123  Q
    |||||||||||||||||||||| ||  ||||||||||| | ||||||||||||    
T  32303689 agcgtgagttaactcacataggacggaaatgagcaaaaacggatgggagaaga 32303741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 37442674 - 37442611
Alignment:
Q  22 taattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactca 86  Q
    |||||||| |||| ||||||  ||||||||||| ||||| ||||||| |||||||||||||||||    
T  37442674 taattgctcttcttccatctgtttttgctcattcccgtc-aaatagccgagcgtgagttaactca 37442611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 32827144 - 32827076
Alignment:
Q  19 tgataattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcaca 88  Q
    ||||||||||| |||||| ||||  ||||||||||||||||| ||||||  || | ||||||||||||||    
T  32827144 tgataattgctattctcctatctatttttgctcatttccgtc-aaatagtcgaacatgagttaactcaca 32827076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 34594659 - 34594726
Alignment:
Q  24 attgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcacatagg 92  Q
    |||||| |||||||||||  |||| |||||| |||| ||| |||| |||||||||||||| ||||||||    
T  34594659 attgctcttctcccatcttttttttctcattcccgttaaa-tagccgagcgtgagttaacgcacatagg 34594726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 33102177 - 33102107
Alignment:
Q  17 tatgataattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcac 87  Q
    |||| |||||||| |||||  ||||  ||||||||||| ||||||||||||| ||||||||||||||||||    
T  33102177 tatgctaattgctcttctcttatctgtttttgctcattcccgtcaaaatagccgagcgtgagttaactcac 33102107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 7913311 - 7913356
Alignment:
Q  43 gttttgctcatttccgtcaaaatagctgagcgtgagttaactcaca 88  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||    
T  7913311 gttttgctcatttccgtcaaaatagttgagcgtgagttaacacaca 7913356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 12750154 - 12750221
Alignment:
Q  20 gataattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcac 87  Q
    |||||||||| |||||||||||  |||| |||||  ||||| ||||||| ||||||||||||||||||    
T  12750154 gataattgctcttctcccatctgtttttcctcatccccgtccaaatagccgagcgtgagttaactcac 12750221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 22842147 - 22842214
Alignment:
Q  20 gataattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcac 87  Q
    |||||||| | |||||||||||  |||| |||||| ||||||||||||  ||||||||||||||||||    
T  22842147 gataattgttcttctcccatctgttttttctcattcccgtcaaaatagtcgagcgtgagttaactcac 22842214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 34072986 - 34072929
Alignment:
Q  35 cccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcacatagg 92  Q
    ||||||| |||||||||||| |||| |||||||  |||| ||||||||||||| ||||    
T  34072986 cccatctggttttgctcattcccgttaaaataggcgagcatgagttaactcacgtagg 34072929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 12750272 - 12750320
Alignment:
Q  75 tgagttaactcacatagggcgataatgagcaaaagcagatgggagaaga 123  Q
    ||||||||||||| ||||| |  ||||||||||| ||||||||||||||    
T  12750272 tgagttaactcacgtagggtgggaatgagcaaaaacagatgggagaaga 12750320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 623012 - 622946
Alignment:
Q  19 tgataattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactc 85  Q
    ||||||||||| |||||||||||  ||||||| ||  |||||||||||||||||| |||||||||||    
T  623012 tgataattgctattctcccatctgtttttgcttatccccgtcaaaatagctgagcctgagttaactc 622946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 10369486 - 10369528
Alignment:
Q  44 ttttgctcatttccgtcaaaatagctgagcgtgagttaactca 86  Q
    |||||||||||||||||||||| | ||||||||||||||||||    
T  10369486 ttttgctcatttccgtcaaaatggttgagcgtgagttaactca 10369528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 21322632 - 21322571
Alignment:
Q  26 tgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcac 87  Q
    |||| |||||||||||  ||||||||| | ||||||||||||| ||| ||||||||||||||    
T  21322632 tgctcttctcccatctgtttttgctcaatcccgtcaaaatagccgagggtgagttaactcac 21322571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 52186957 - 52186914
Alignment:
Q  44 ttttgctcatttccgtcaaaatagctgagcgtgagttaactcac 87  Q
    ||||||||| |||| |||||||||| ||||||||||||||||||    
T  52186957 ttttgctcacttccatcaaaatagccgagcgtgagttaactcac 52186914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 20991562 - 20991619
Alignment:
Q  31 ttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcaca 88  Q
    |||||||||||  ||||||||||| ||||||||||||| |||||||||||||| ||||    
T  20991562 ttctcccatctaattttgctcattcccgtcaaaatagccgagcgtgagttaacccaca 20991619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 35310487 - 35310431
Alignment:
Q  32 tctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcaca 88  Q
    ||||||||||  ||||||||||  ||||||||||||| |||||||||||||||||||    
T  35310487 tctcccatctatttttgctcatccccgtcaaaatagccgagcgtgagttaactcaca 35310431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 54019151 - 54019107
Alignment:
Q  44 ttttgctcatttccgtcaaaatagctgagcgtgagttaactcaca 88  Q
    |||||||||||| ||||||||||| | ||||||||||||||||||    
T  54019151 ttttgctcattttcgtcaaaatagttaagcgtgagttaactcaca 54019107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 6620026 - 6620068
Alignment:
Q  44 ttttgctcatttccgtcaaaatagctgagcgtgagttaactca 86  Q
    ||||||||||| |||||||||||| ||||||||||||||||||    
T  6620026 ttttgctcattcccgtcaaaatagttgagcgtgagttaactca 6620068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 39556087 - 39556020
Alignment:
Q  19 tgataattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcac 87  Q
    |||||||||||||||||| ||||  ||||||||||| ||||| ||||||  ||| ||||||||||||||    
T  39556087 tgataattgcttttctcctatctgattttgctcattcccgtc-aaatagtcgagtgtgagttaactcac 39556020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 13387318 - 13387383
Alignment:
Q  22 taattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcac 87  Q
    |||||| |||||||||||||  ||||  ||||| ||||||||||||   |||||||||||||||||    
T  13387318 taattgtttttctcccatctgtttttcttcattcccgtcaaaatagtcaagcgtgagttaactcac 13387383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 23192 - 23256
Alignment:
Q  22 taattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactcac 87  Q
    |||||||| |||||||||||  ||||||| ||||||||| ||||||| |||||||||| |||||||    
T  23192 taattgctcttctcccatctatttttgcttatttccgtc-aaatagcagagcgtgagtgaactcac 23256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 3756376 - 3756439
Alignment:
Q  22 taattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactc 85  Q
    |||||||| ||||||||| |  ||||||||||| ||||||||||||  ||| ||||||||||||    
T  3756376 taattgctcttctcccatttgtttttgctcattcccgtcaaaatagtcgagtgtgagttaactc 3756439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 33819023 - 33818957
Alignment:
Q  20 gataattgcttttctcccatctcgttttgctcatttccgtcaaaatagctgagcgtgagttaactca 86  Q
    ||||||||||||||| ||||||  ||||||||||  |||||||| |||  || ||||||||||||||    
T  33819023 gataattgcttttcttccatctgtttttgctcatccccgtcaaagtaggcgaacgtgagttaactca 33818957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University